DRSC/TRiP Functional Genomics Resources

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Protein Alignment sv and pax9

DIOPT Version :10

Sequence 1:NP_524633.3 Gene:sv / 43825 FlyBaseID:FBgn0005561 Length:844 Species:Drosophila melanogaster
Sequence 2:XP_002935394.1 Gene:pax9 / 100485934 XenbaseID:XB-GENE-482238 Length:360 Species:Xenopus tropicalis


Alignment Length:453 Identity:149/453 - (32%)
Similarity:201/453 - (44%) Gaps:140/453 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 GGVNQLGGVFVNGRPLPDVVRQRIVELAHNGVRPCDISRQLRVSHGCVSKILSRYYETGSFKAGV 241
            |.|||||||||||||||:.:|.||||||..|:||||||||||||||||||||:||.||||...|.
 Frog     6 GEVNQLGGVFVNGRPLPNAIRLRIVELAQLGIRPCDISRQLRVSHGCVSKILARYNETGSILPGA 70

  Fly   242 IGGSKPKVATPPVVDAIANYKRENPTMFAWEIRDRLLAEAICSQDNVPSVSSINRIVRNKAAEKA 306
            ||||||:|.||.||..|..||:.:|.:|||||||||||:.:|.:.||||||||:||:|||....|
 Frog    71 IGGSKPRVTTPTVVKHIRTYKQRDPGIFAWEIRDRLLADGVCDKYNVPSVSSISRILRNKIGNLA 135

  Fly   307 KHVHH--HQQHHVSQS--------------LGGGHIAT-ESVDSSTGTIGEPQP-PTSNSSANSV 353
            :..|:  |:||..:.|              ..|..:.| ..:.|..||:|.|:. |:|:|.    
 Frog   136 QQNHYESHKQHPAAASALPYNHLYSYPSPIAAGAKVPTPPGMPSIPGTMGMPRTWPSSHSV---- 196

  Fly   354 NTNVSASASVHASIPTSGTDSVQVSVGHINANSNETTHINSTAEQRTTGYSINGILGIQHGHHSH 418
             |::....|:        ||.|           ::|:...|...:..:..|.|.....||     
 Frog   197 -TDILGIRSI--------TDQV-----------SDTSPYPSPKLEEWSSLSRNTFQSAQH----- 236

  Fly   419 NNNNNSSVNNNNNTESSCKRKRIEAHDENHDTNIHSDNDDGKRQRMSTYSGDQLYTNIWSGKWCI 483
                     ..|..|.|...:.::                              |:...||    
 Frog   237 ---------VLNGLEKSSLEQEVK------------------------------YSQSASG---- 258

  Fly   484 KDDHKLLAELGNLTASTGNCPATYYEASNGFSTTPISGSGATASGNDTSMLYDSITTISQTQSSI 548
                  |..:....|::|..|..        :|.|:|.             |.:.:|.:.|    
 Frog   259 ------LPAVSGFVAASGMTPYP--------TTAPVSP-------------YMAYSTAAPT---- 292

  Fly   549 YTPAIGPSIGTG-SLTPLVPISMHEMKLSANSIQEQTVPPFYTALAFDGNYTSMTSLENCSSL 610
                 |...|.| ..|...|:|.|...::|             :|||.|.:|:..:.|:..|:
 Frog   293 -----GYVTGHGWQHTGGTPLSPHSCDITA-------------SLAFKGMHTAREAEESKLSI 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
svNP_524633.3 PAX 175..299 CDD:128645 88/121 (73%)
pax9XP_002935394.1 PAX 6..131 CDD:238076 90/124 (73%)

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