DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cals and clstn1

DIOPT Version :9

Sequence 1:NP_001259086.1 Gene:Cals / 43824 FlyBaseID:FBgn0039928 Length:979 Species:Drosophila melanogaster
Sequence 2:XP_005162326.1 Gene:clstn1 / 777737 ZFINID:ZDB-GENE-040426-1064 Length:981 Species:Danio rerio


Alignment Length:1037 Identity:316/1037 - (30%)
Similarity:496/1037 - (47%) Gaps:194/1037 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LEKSYHGLIRENETLVEI-TPLIKVN-----------------EEKICNFHILKKPYH--EIPFK 86
            :|.:|||::.||:..|.: .|||.::                 |.:||.|.|     |  .:||:
Zfish    35 IETTYHGIVTENDDKVLLDPPLIALDKDAPLRYAESFEVTFTKEGEICGFRI-----HGQNVPFE 94

  Fly    87 IELVNNL---GILKARRTLNCENRKSYHFEICAIYCDGTP-------SNTANVHITVIDVNEYAP 141
            ..:::..   |:::|:..|:||.:|.:.|.|.|..|...|       |:.|.|||.|.|||||:|
Zfish    95 AVVLDKSTGEGVIRAKDKLDCELQKEHTFTIQAYDCGEGPDGGNMKKSHKATVHIQVNDVNEYSP 159

  Fly   142 TFLEPSYVIEVDEGRLYNEILRVEASDKDCTPLFGDVCKYEILNNDEPFSIDNEGSIKNTEPLSH 206
            .|.|.||...|.||:.|:.|::|||.|.||:..|..:|.|||:..|.||:||.:|:|||||.|::
Zfish   160 VFKEKSYKATVIEGKKYDSIMKVEAVDADCSFQFSQICSYEIVTPDVPFTIDKDGNIKNTEKLNY 224

  Fly   207 KASHNHILSVVAYDCAM-KESAPIMVSIKVRRVCETKFVGMPERIDYTSGSTESLQLFPNARLDL 270
            .....:.|:|.||||.. :.|..::|.|.::..|:..:.|..:||:|..| |.||.|||:..|:.
Zfish   225 GKERMYKLTVTAYDCGKNRASEDVLVKINIKPTCKPSWQGFNKRIEYEPG-TGSLALFPSMHLET 288

  Fly   271 CDISCKNEEDLRIHSSIALKTKHISFGCDRDISN-------CTSGQKVKDLLP---HGAEWTKEL 325
            |:     |....|.:||.|:|.||..|||||..:       |.:.....:|||   :.|.||..|
Zfish   289 CE-----EPITSIQASIMLETNHIGKGCDRDTYSEKSLHKLCGASSGTVELLPAPSNSANWTVGL 348

  Fly   326 SYDEG--LEPIFHFDGSTGVVVPATVIDHYDFSSQPFSILTLFRHNSQVEINKHVKEHIVCSADD 388
            ..|.|  .:.:|.|:|:..:.||..|:.  ....:||:|....||..    ....||.|:|::|.
Zfish   349 PTDNGHDSDQVFEFNGTQAIKVPEGVVS--TTLKEPFTISVWMRHGP----GGREKETILCNSDK 407

  Fly   389 HKMNRHHMALFVRNCRLIFLLRKNFNEGDLNIFSPAEWRWKIPEVCDNEWHHYVLNVEDSSKVDL 453
            .:|||||.:|:|.||||:.|||:...|.:  .:.|||:.||:.:|||.||||||||:|..: |.|
Zfish   408 TEMNRHHYSLYVHNCRLVLLLRQEPTESE--SYKPAEFHWKLDQVCDKEWHHYVLNIEFPA-VTL 469

  Fly   454 FIDGVRFENSIENRHSNPEVIDDWPLHAAHGVNTSLAIGACYQSLEN-----------------R 501
            |:||..||..:        |.:|:|||.:. :.|.|.||||:|....                 |
Zfish   470 FVDGGTFEPFL--------VTEDYPLHTSK-IETQLTIGACWQDFSGHDNDTETLSEPLTGGSAR 525

  Fly   502 LKHGFNGDISEVKVSLNSVLTAEDIKCGTTCAEHLLAPKPLQSNNEKSYSDNSQIKENIEMNEIY 566
            :...|.|:::.:.:....:...:.|.|..||.|.|    .:|...|.:    |.:|.....|:..
Zfish   526 MTQFFRGNLAGLMIRSGKLENKKVIDCLYTCKEGL----DVQLPEEVA----SAVKVEFNPNQSS 582

  Fly   567 ISAKNKHDIEQF---MRKVQYINTKQKPTVGRRNIEVLTTLNCKNESS-LRLPPIETYIMVNEPI 627
            :|.:. .|||.|   |:.:.|:|::|.||.|.|::.|.||:.|.||.: :.:|..|.|:||.:|.
Zfish   583 LSLEG-DDIESFEKVMQHISYLNSRQFPTPGIRHLRVSTTVKCFNEETCISVPDSEGYVMVLQPE 646

  Fly   628 AP----LGIDIDVVSASLETSDLTPPSYSPKIAISGTSNKLVSYQEIKLGVHILEKTCIDSVSKN 688
            .|    .||| .....:.|...:...:..|::.|..|..:.|   |::.......:...|...:.
Zfish   647 EPKISLSGID-HFARGAAEFESVEGVTLFPELRIVSTITREV---EVEAEAETEAEGEDDPTVQE 707

  Fly   689 NGKLEEKNH-IDSCSV-VVFPSLNPDHEDIKIDGDESLSSSMDI-KTNINKDGVEMIGKDTISNY 750
            ....||..| :|:|.| ||...||.|||.:::|..:....:::: .:|:   |:.:.|.:|::||
Zfish   708 TVVSEEIMHNLDTCEVTVVGEDLNGDHESLEVDLAQIQQRALEMSSSNV---GMVITGVNTMANY 769

  Fly   751 INVLRSLVYSNKKPAYYLNRVFKLSCAQQSSQYKSGEYTLTLTVLHPKQTLFKSTN--VLPSSLS 813
            ..||..:.|.|.......:|.|||.|::.:.:|.|.|:.:.:.|:|....:..:.|  |.|..:|
Zfish   770 EQVLHLIRYRNWHTEALFDRKFKLVCSELNGRYISNEFKVEVNVIHTANPMDHANNAMVQPQFIS 834

  Fly   814 KVNFIGNTDNETSFHRNSGSVNGNDNNQPTESKVYSYSLLHTNNVQEPKSHIHSFIHKAEGSHVT 878
            :|                         |.....:..::|::|        |..|.:..|.   ..
Zfish   835 QV-------------------------QHASVDLSGHNLVNT--------HQASVVPSAA---TI 863

  Fly   879 MLIILVSVFLAVLLCGVSIARLKNNQKYIEHHQPCPKISDDG----LIWDDSALTITINPMQA-- 937
            ::::.||..:.:::.||...|..        ||...:..::|    :.|||||||||:|||:.  
Zfish   864 VIVVCVSFLVFMIILGVFRIRAA--------HQRTMRDQENGKENEMDWDDSALTITVNPMETYE 920

  Fly   938 -----------------------DVTSDASSESENSESEDEEVALKDGFTHINQLEWDNSNI 976
                                   |:||..|..||:...|.|:   :.|.:...|||||:|.:
Zfish   921 DQHSSEEEGDEEEEESEDGEEEDDITSAESDSSEDEAGEQED---QQGSSRQQQLEWDDSTL 979

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalsNP_001259086.1 Cadherin_repeat 45..138 CDD:206637 36/122 (30%)
Cadherin_repeat 147..238 CDD:206637 39/91 (43%)
LamG <435..527 CDD:304605 32/108 (30%)
clstn1XP_005162326.1 Cadherin_repeat 38..156 CDD:206637 36/122 (30%)
Cadherin_repeat 165..255 CDD:206637 39/89 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594936
Domainoid 1 1.000 276 1.000 Domainoid score I1705
eggNOG 1 0.900 - - E1_KOG1834
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 410 1.000 Inparanoid score I1844
OMA 1 1.010 - - QHG48981
OrthoDB 1 1.010 - - D155997at33208
OrthoFinder 1 1.000 - - FOG0001333
OrthoInspector 1 1.000 - - otm24977
orthoMCL 1 0.900 - - OOG6_103241
Panther 1 1.100 - - LDO PTHR14139
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3174
SonicParanoid 1 1.000 - - X826
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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