DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cals and clstn2

DIOPT Version :9

Sequence 1:NP_001259086.1 Gene:Cals / 43824 FlyBaseID:FBgn0039928 Length:979 Species:Drosophila melanogaster
Sequence 2:XP_002941239.2 Gene:clstn2 / 100493355 XenbaseID:XB-GENE-958942 Length:949 Species:Xenopus tropicalis


Alignment Length:972 Identity:304/972 - (31%)
Similarity:479/972 - (49%) Gaps:161/972 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LEKSYHGLIRE-NETLVEITPLIKVNEE-------KICNFHILKKPYH--EIPFKIELVNNL--- 93
            :|.||||:|.| |:|::...||:.::::       :||.|.|     |  :.||:..::|..   
 Frog    33 IETSYHGVITENNDTVILDPPLVALDKDAPVPFAGEICAFKI-----HGQDTPFEAVVLNKTSGE 92

  Fly    94 GILKARRTLNCENRKSYHFEICAIYCD----GT---PSNTANVHITVIDVNEYAPTFLEPSYVIE 151
            |.|:|:..::||.:|.|.|.|.|..|.    ||   .|:.|.|||.|.||||:||.|.|..|...
 Frog    93 GRLRAKGPIDCEIQKEYTFIIQAYDCGAGQAGTSWKKSHKAVVHIQVNDVNEFAPVFKEKKYSAM 157

  Fly   152 VDEGRLYNEILRVEASDKDCTPLFGDVCKYEILNNDEPFSIDNEGSIKNTEPLSHKASHNHILSV 216
            |.||::|:.||:|||.|:||:|.:..:|.|||:.:|.||:||..|:|:|||.||:...|.:.:.|
 Frog   158 VTEGKIYDSILQVEAMDEDCSPQYSQICNYEIVTSDVPFAIDRNGNIRNTEKLSYDKQHQYEIKV 222

  Fly   217 VAYDCAMKESA-PIMVSIKVRRVCETKFVGMPERIDYTSGSTESLQLFPNARLDLCD--ISCKNE 278
            .||||..|.:. .:.|.:.::.||:..:....:||:|..|| .|:.|.|..||:.||  :|.   
 Frog   223 TAYDCGQKHATEDVTVIVDIKPVCKPGWQDWDKRIEYNPGS-GSIALLPTVRLETCDGPVSF--- 283

  Fly   279 EDLRIHSSIALKTKHISFGCDRDISN-------CTSGQKVKDLLPH---GAEWTKELSYD-EGLE 332
                |.:||.|:|.||..||||:..:       |.:.....||||.   ...||..|..| .|: 
 Frog   284 ----IRTSIELQTNHIGKGCDRETYSDASLKALCGASSGAIDLLPSPSASTNWTAGLIMDNSGM- 343

  Fly   333 PIFHFDGSTGVVVPATVIDHYDFSSQPFSILTLFRHNSQVEINKHVKEHIVCSADDHKMNRHHMA 397
             ||.|||..||.:|..::.. :.:.| |:|....:|.....:... ||.|:|::|..:|||||.|
 Frog   344 -IFKFDGKQGVKIPDAILPK-NLTDQ-FTITMWMKHGPSPGLRAE-KETILCNSDKTEMNRHHYA 404

  Fly   398 LFVRNCRLIFLLRKNFNEGDLNIFSPAEWRWKIPEVCDNEWHHYVLNVEDSSKVDLFIDGVRFEN 462
            |:|.||||:||||::|::.|  .|.|||:.||:.::||.|||:|::|:. ...|.|::||..:|.
 Frog   405 LYVHNCRLVFLLRRDFDQAD--TFRPAEFHWKLDQICDKEWHYYIINIA-FPLVTLYMDGATYEP 466

  Fly   463 SIENRHSNPEVIDDWPLHAAHGVNTSLAIGACYQSLE---NRLKHGFNGDISEVKVSLNSVLTAE 524
            .:        |.:|||:|.:| :...|.:|||:|..|   .:....|:|.|:.:.:....:.:.:
 Frog   467 YL--------VTNDWPIHPSH-IAMQLTVGACWQGGEVTKPKFAQYFHGSIAGLMLRPGKIESHK 522

  Fly   525 DIKCGTTCAEHLLAPKPLQSNNEKSYSDNSQ-IKE--NIEMNEIYISAKNKHDIEQFMRKVQYIN 586
            .|.|...|.|.|         :.||..:..| :|.  |...:.:.:..::...|.|.:|.|.|||
 Frog   523 MISCLQACKEGL---------DIKSLENLGQGVKYHFNPSQSALVMEGEDIESINQALRTVSYIN 578

  Fly   587 TKQKPTVGRRNIEVLTTLNCKNESS-LRLPPIETYIMV---NEP-IAPLGIDIDVVSASLETSDL 646
            ::|.||.|:|.::|.:.:.|..|.: :.:|.||.||||   ||| |...|:|.....|| |..:.
 Frog   579 SRQFPTAGKRRLKVSSKVQCFGEDTCITIPDIEAYIMVVQANEPKITVTGMDHFARPAS-EFENA 642

  Fly   647 TPPSYSPKIAISGTSNKLVSYQEIKLGVHILEKTCIDSVSKNNGKL---EEKNHIDSCSVVVFPS 708
            ......|.|.|:.|..|             :||....:|.|.|..:   |..:|:|.|.|:|   
 Frog   643 NGVILLPDIRITSTVTK-------------MEKRLSKNVGKTNAPVVVEETLHHLDFCDVMV--- 691

  Fly   709 LNPDHEDIK---IDGDESLSSSMDIKTNINKDGVEMIGKDTISNYINVLRSLVYSNKKPAYYLNR 770
             :.:..|:|   ::.|.:......::...:..|..:.|..|:.:|.:||:.:.|.:...|....|
 Frog   692 -SGEELDVKKECLELDRTALQGKHLEATNSTKGYSIYGVGTMKSYEDVLQQIRYRHWDSASIFGR 755

  Fly   771 VFKLSCAQQSSQYKSGEYTLTLTVLHPKQTLFKSTNVLPSSLSKVNFIGNTDNETSFHRNSGSVN 835
            .||:.|::.:.:|.|.|..|.:.:||                 ..||:.:.              
 Frog   756 KFKVKCSELNGRYTSNELNLEVNILH-----------------NSNFMDHV-------------- 789

  Fly   836 GNDNNQPTESKVYSYSLLHTNNVQEPKSHIHSFIHK---AEGSHVTMLIILVSVFLAVLLCGVSI 897
                |.....:.:..||.|      |.:.:..  |:   :.|:...:|:..||:.:.:::.|:..
 Frog   790 ----NHMMIQQEFMPSLQH------PSTELSK--HETRVSPGATTIVLVACVSILVIIVVLGIFR 842

  Fly   898 ARLKNNQKYIEHHQPCPKISDDGLIWDDSALTITINPM---QADVTSDASSESENSESEDEE 956
            .|..:...:.|..    .:.||.|.|||||||||:|||   :...|::..||.|..|.|.||
 Frog   843 LRAVHQHDFQEKE----AVKDDELTWDDSALTITVNPMEKYETHGTNEGESEVEEEEEEIEE 900

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CalsNP_001259086.1 Cadherin_repeat 45..138 CDD:206637 39/112 (35%)
Cadherin_repeat 147..238 CDD:206637 38/91 (42%)
LamG <435..527 CDD:304605 26/94 (28%)
clstn2XP_002941239.2 Cadherin_repeat 36..144 CDD:206637 39/112 (35%)
Cadherin_repeat 154..245 CDD:206637 38/90 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 282 1.000 Domainoid score I1633
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H49698
Inparanoid 1 1.050 409 1.000 Inparanoid score I1826
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D155997at33208
OrthoFinder 1 1.000 - - FOG0001333
OrthoInspector 1 1.000 - - otm49521
Panther 1 1.100 - - O PTHR14139
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3174
SonicParanoid 1 1.000 - - X826
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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