DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arf4 and Trim23

DIOPT Version :10

Sequence 1:NP_524631.1 Gene:Arf4 / 43823 FlyBaseID:FBgn0013749 Length:180 Species:Drosophila melanogaster
Sequence 2:XP_008758905.1 Gene:Trim23 / 81002 RGDID:621587 Length:601 Species:Rattus norvegicus


Alignment Length:164 Identity:99/164 - (60%)
Similarity:128/164 - (78%) Gaps:1/164 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWR 79
            |.::|::.:|||.|||||||:|||..|.:..|||||||||||||||:.||:|||||:.|:||||:
  Rat   429 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 493

  Fly    80 HYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLR 144
            ||:.|||.::|||||:.||||:||..||..:|.|.|||||:||:||||||:..|::..|:|:.|.
  Rat   494 HYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLS 558

  Fly   145 LNQL-RNRHWFIQSTCATQGHGLYEGLDWLSAEL 177
            |::| ..|.|:||...|..|.||||||||||.:|
  Rat   559 LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arf4NP_524631.1 P-loop containing Nucleoside Triphosphate Hydrolases 1..180 CDD:476819 99/164 (60%)
Trim23XP_008758905.1 mRING-HC-C3HC3D_TRIM23_C-IX 55..104 CDD:438307
Bbox2_TRIM23_C-IX_rpt1 150..199 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 201..250 CDD:380832
BBC 253..397 CDD:128778
ARD1 433..601 CDD:206723 98/160 (61%)
Blue background indicates that the domain is not in the aligned region.

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