DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Arf102F and Trim23

DIOPT Version :9

Sequence 1:	NP_001259087.1	Gene:	Arf102F / 43823	FlyBaseID:	FBgn0013749	Length:	180	Species:	Drosophila melanogaster
Sequence 2:	XP_008758905.1	Gene:	Trim23 / 81002	RGDID:	621587	Length:	601	Species:	Rattus norvegicus

Alignment Length:	164	Identity:	99/164 - (60%)
Similarity:	128/164 - (78%)	Gaps:	1/164 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly    15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWR 79
            |.::|::.:|||.|||||||:|||..|.:..|||||||||||||||:.||:|||||:.|:||||:
  Rat   429 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 493

  Fly    80 HYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDLPNAMTAAELTDKLR 144
            ||:.|||.::|||||:.||||:||..||..:|.|.|||||:||:||||||:..|::..|:|:.|.
  Rat   494 HYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLS 558

  Fly   145 LNQL-RNRHWFIQSTCATQGHGLYEGLDWLSAEL 177
            |::| ..|.|:||...|..|.||||||||||.:|
  Rat   559 LHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 592

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Arf102F	NP_001259087.1	YlqF_related_GTPase	1..180	CDD:424112	99/164 (60%)
Trim23	XP_008758905.1	zf-RING_UBOX	58..100	CDD:290181
		BBOX	152..195	CDD:237988
		BBOX	200..246	CDD:197662
		BBC	253..397	CDD:128778
		ARD1	433..601	CDD:206723	98/160 (61%)
		Ras	433..592	CDD:278499	97/158 (61%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0070
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1362554at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820