DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arf102F and Arl4a

DIOPT Version :9

Sequence 1:NP_001259087.1 Gene:Arf102F / 43823 FlyBaseID:FBgn0013749 Length:180 Species:Drosophila melanogaster
Sequence 2:NP_062059.1 Gene:Arl4a / 29308 RGDID:2152 Length:200 Species:Rattus norvegicus


Alignment Length:181 Identity:76/181 - (41%)
Similarity:116/181 - (64%) Gaps:6/181 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SSLLTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-----KNICFTV 65
            :|:|:.|...:...|:::|||.|||||:||:|:..|.|.|:||.|||.|.::.     |.:.|..
  Rat     9 TSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVTFHF 73

  Fly    66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQDL 130
            ||||||:|:||||:.|.:.|.|::|||||.|.:|:.||:.||..:.:..|.:...:|:.||||||
  Rat    74 WDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDL 138

  Fly   131 PNAMTAAELTDKLRLNQL-RNRHWFIQSTCATQGHGLYEGLDWLSAELAKK 180
            .|:::.:|:...|.:.:| .:..|.:|.|||..|.||.|||:.|...:.|:
  Rat   139 RNSLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKR 189

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arf102FNP_001259087.1 YlqF_related_GTPase 1..180 CDD:424112 75/179 (42%)
Arl4aNP_062059.1 Arl4_Arl7 18..200 CDD:206719 73/172 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0070
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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