DRSC/TRiP Functional Genomics Resources

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Protein Alignment Arf4 and arc-1

DIOPT Version :10

Sequence 1:NP_524631.1 Gene:Arf4 / 43823 FlyBaseID:FBgn0013749 Length:180 Species:Drosophila melanogaster
Sequence 2:NP_496089.3 Gene:arc-1 / 174525 WormBaseID:WBGene00000180 Length:539 Species:Caenorhabditis elegans


Alignment Length:168 Identity:59/168 - (35%)
Similarity:99/168 - (58%) Gaps:9/168 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNICFTVWDVGGQDKIRPLW 78
            :.|::::|||.||||:|:.:||..::.|.:   ||||||:||:.|||.....|||||..|:|.||
 Worm   369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLW 433

  Fly    79 RHYFQNTQGLIFVVDSNDRDRITEAERELQNMLQEDELRDAVLLVFANKQD--LPNAMTAAELTD 141
            :||:.|.|.:.:|:|....:|.:||.:||..::.:..:....::|..|::|  ..|....|.|: 
 Worm   434 KHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKDGYALNGHMDALLS- 497

  Fly   142 KLRLNQLRNRHWFIQSTCATQGHGLYEGLDWLSAELAK 179
              :|..|..:|.|.....|| |.|:.:.:|.::..|::
 Worm   498 --QLEALPFQHHFHCCDAAT-GSGIDQIIDQITVCLSR 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Arf4NP_524631.1 P-loop containing Nucleoside Triphosphate Hydrolases 1..180 CDD:476819 59/168 (35%)
arc-1NP_496089.3 mRING-HC-C3HC3D_arc-1-like 3..56 CDD:438486
Bbox2_TRIM23_C-IX_rpt1 104..153 CDD:380831
Bbox2_TRIM23_C-IX_rpt2 156..205 CDD:380832
BBC 208..339 CDD:128778
Arf_Arl 371..526 CDD:206644 58/158 (37%)
Blue background indicates that the domain is not in the aligned region.

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