DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and GLR3.3

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_001322169.1 Gene:GLR3.3 / 840859 AraportID:AT1G42540 Length:933 Species:Arabidopsis thaliana


Alignment Length:942 Identity:211/942 - (22%)
Similarity:375/942 - (39%) Gaps:165/942 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PPVIRVGAIFTEDERESSI-ESAFKYAIYRINKEKTLLPNTQLVYDIEYVPRDDSFRTTKKVCSQ 103
            |.|:::|:||:.|.....: :.|...|:..:|....:|..|:....::. .....|....:....
plant    26 PKVVKIGSIFSFDSVIGKVAKIAIDEAVKDVNSNPDILSGTKFSVSMQN-SNCSGFMGMVEALRF 89

  Fly   104 LEAGVQAIFGPTDALLASHVQSICEAYDIP--------HIEGRIDLEYNSKEFSINLYPSHTLLT 160
            :|..:..|.||..:::|..:..:.....:|        .:...:...|..:....:||...    
plant    90 MEKDIVGIIGPQCSVVAHMISHMANELRVPLLSFAVTDPVMSPLQFPYFIRTTQSDLYQMD---- 150

  Fly   161 LAYRDIMVYLNWTKV-AIIYEEDYGLFNLMHSSTETKAEMYIR-----QASPDSYRQVLRAIRQK 219
             |...|:.:..|.:| |:..::|:|. |.:.:..:..|...:|     ...||:      |:.:.
plant   151 -AIASIVDFYGWKEVIAVFVDDDFGR-NGVAALNDKLASRRLRITYKAGLHPDT------AVNKN 207

  Fly   220 EIYKIIVD---TNPS----HIKS-----FFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSV 272
            ||..:::.   ..|.    |:.|     .|:....|.|..:.|.::.|.:.....|      :|.
plant   208 EIMNMLIKIMLLQPRIVVIHVYSELGFAVFKEAKYLGMMGNGYVWIATDWLSTNLD------SSS 266

  Fly   273 NITAFRL-------------VDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYA 324
            .:.|.||             .|.|.||  |...:.:|:.       ..|..:.|.....:|||..
plant   267 PLPAERLETIQGVLVLRPHTPDSDFKR--EFFKRWRKMS-------GASLALNTYGLYAYDSVML 322

  Fly   325 FANGLH-------FLNLDNHQ--NFYIK--NLSCTSDQTWNDGISLYNQINAAITDGLTGTVQFV 378
            .|.||.       .::..||.  |...|  ||:..:...::.|.:|...|......||||.:||.
plant   323 LARGLDKFFKDGGNISFSNHSMLNTLGKSGNLNLEAMTVFDGGEALLKDILGTRMVGLTGQLQFT 387

  Fly   379 EGR-RNIFKLDILKLKQEKIQKVGYWHPDDGVNISDPTAFYDSNIANITL------VVMTRE--- 433
            ..| |.....||:.:....::::|||....|::...|...|.....|::.      |:...|   
plant   388 PDRSRTRPAYDIINVAGTGVRQIGYWSNHSGLSTVLPELLYTKEKPNMSTSPKLKHVIWPGETFT 452

  Fly   434 -ERPYVMVKEDKNL-------------------TGNLRFEGFCIDLLKAIATQVGFQYKIELVPD 478
             .|.:|.....|.|                   |.|: |:|||||:..|....:.:...::.:| 
plant   453 KPRGWVFSNNGKELKIGVPLRVSYKEFVSQIRGTENM-FKGFCIDVFTAAVNLLPYAVPVKFIP- 515

  Fly   479 NMYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGIL--FKVPTSQ 541
              || ...|..|:..:|:.:.....|..|..:.|...|..::|||:|:...|:.::  ||...| 
plant   516 --YG-NGKENPSYTHMVEMITTGNFDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNS- 576

  Fly   542 PTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFW 606
              ..::|:.|....:|......::.|...::::...:..|::.|.   |...:....||.|..|:
plant   577 --GAWAFLRPFNRLMWAVTGCCFLFVGIVVWILEHRTNDEFRGPP---KRQCVTILWFSFSTMFF 636

  Fly   607 FITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQT 671
                     ....|..:|..|:|...|.|..|||.|||||:|.:.|||:::.|||:....|.|:.
plant   637 ---------AHRENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLRERD 692

  Fly   672 E-ISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRVMEGSYAFLMESTML 735
            : |.|   :.||....:..:::.|.:.  |.:.......:.|..:||..:  .|..|.:.|...:
plant   693 DPIGY---QVGSFAESYLRNELNISES--RLVPLGTPEAYAKALKDGPSK--GGVAAIVDERPYV 750

  Fly   736 DYAVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKW-WKNTGDVC 799
            :..:..:|....:|......|:|.|.|:.||....:|.|||||.|.|.:|.::||| .||   .|
plant   751 ELFLSSNCAYRIVGQEFTKSGWGFAFPRDSPLAIDLSTAILELAENGDLQRIHDKWLMKN---AC 812

  Fly   800 NRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNL---------------N 849
            ..::...||  :.|.:::..|:|  |:||  :|.::|:|.:.....:.|               |
plant   813 TLENAELES--DRLHLKSFWGLF--LICG--VACLLALFLYFVQIIRQLYKKPTDDAIARDQQQN 871

  Fly   850 TENQSLCSEMAEELRFAMHCHGSKSRHRPRKR 881
            .::.|:.|...:.....|. ...:|:|..:||
plant   872 HDSSSMRSTRLQRFLSLMD-EKEESKHESKKR 902

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 84/417 (20%)
ANF_receptor 61..393 CDD:279440 76/382 (20%)
PBP2_iGluR_Kainate 424..793 CDD:270432 100/401 (25%)
Lig_chan 555..829 CDD:278489 74/275 (27%)
GLR3.3NP_001322169.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 164 1.000 Inparanoid score I1601
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.870

Return to query results.
Submit another query.