DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and GLR2.3

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_001325281.1 Gene:GLR2.3 / 817007 AraportID:AT2G24710 Length:919 Species:Arabidopsis thaliana


Alignment Length:897 Identity:194/897 - (21%)
Similarity:340/897 - (37%) Gaps:218/897 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 VQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSKEFSINLYPSHTLLTLAYRD------- 165
            |:||.||..::.|..:..|.:...:|.:      .|::....:....|...|...|.|       
plant   120 VKAILGPWTSMQAHFLIEIGQKSRVPIV------SYSATSPILTSLRSPYFLRATYEDSFQVQPI 178

  Fly   166 --IMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAEMYIRQASPDSYRQVLRAIRQKEIYKIIVD- 227
              |:....|.:|..:|.::.....:|...|:...::.:|    ..||.|: ||...: ::|.|: 
plant   179 KAIIKLFGWREVVPVYIDNTFGEGIMPRLTDALQDINVR----IPYRSVI-AINATD-HEISVEL 237

  Fly   228 ----TNPSHI----------KSFFRSILQLQMNDHRYHYMFT--------------------TFD 258
                ..|:.:          ..||....:|.:.:..|.::.|                    ...
plant   238 LKMMNMPTRVFLVHMYYDLASRFFIKAKELGLMEPGYVWILTNGVIDDLSLINETAVEAMEGVLG 302

  Fly   259 LETY-----DLEDFR------YNSVNITAFRLVDVDSKRYLEV------INQM------------ 294
            ::||     |||.||      :..|.::.:.|...|:...|.|      .|.|            
plant   303 IKTYIPKSPDLEKFRSRWRSLFPRVELSVYGLWAYDATTALAVAIEEAGTNNMTFSKVVDTGRNV 367

  Fly   295 QKLQHNGLDTINGSPYIQTESALMFDSV---YAFANGLHFLNLDNHQNFYIKNLSCTSDQT---W 353
            .:|:..||... |...:||...:.|..:   :.|..|....::     |.|.|:..|.:::   |
plant   368 SELEALGLSQF-GPKLLQTLLTVQFRGLAGEFRFFRGQLQPSV-----FEIVNIINTGEKSIGFW 426

  Fly   354 NDGISLYNQINAAITDGLTGTVQFVEGRRNIFKLDILKLKQEKIQKVGYWHPDDG----VNISDP 414
            .:|..|..::     |....::..:...::..|..:...:.:.:.| |:..|..|    :.:...
plant   427 KEGNGLVKKL-----DQQASSISALSTWKDHLKHIVWPGEADSVPK-GWQIPTKGKKLRIGVPKR 485

  Fly   415 TAFYDSNIANITLVVMTREERPYVMVKEDKNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDN 479
            |.:.|       ||.:||:.           :|.:....|||||..:|:..::.:....|.:|..
plant   486 TGYTD-------LVKVTRDP-----------ITNSTVVTGFCIDFFEAVIRELPYDVSYEFIPFE 532

  Fly   480 MYGVYIPE---TNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQ 541
            .     |:   ..::|.:|.::...|.|..|...||...|.|.:|||.||:..|:|::.::....
plant   533 K-----PDGKTAGNYNDLVYQVYLGRYDAVVGDTTILVNRSSYVDFTFPFIKSGVGLIVEMTDPV 592

  Fly   542 PTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWK-NPH----PCYKETDIVENQFSI 601
            ......||.||:.::||....::.||...::|:      |:| ||.    |          :|..
plant   593 KRDYILFMKPLSWKLWLTSFISFFLVGCTVWVL------EYKRNPDFSGPP----------RFQA 641

  Fly   602 SNSFWFITGTFLRQGSGLNPK----ATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIE 662
            |...||...|.:     ..|:    :...|.:...|:|..|::..||||:||:.||.:::...|.
plant   642 STICWFAFSTMV-----FAPRERVFSFWARALVIAWYFLVLVLTQSYTASLASLLTSQKLNPTIT 701

  Fly   663 SASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMEN---RKTAVFVKTYEDGIKRVMEG 724
            |.|.|          ||.|.|:.:.|.|.|     :.:..|.   :.:.|...|.|:..:.:.:|
plant   702 SMSSL----------LEKGETVGYQRTSFI-----LGKLKERGFPQSSLVPFDTAEECDELLSKG 751

  Fly   725 ------SYAFLMESTMLDYAVQRDCN-LTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKG 782
                  |.||| |...|...:.:.|| ...:....:..|:|...|.|||....:|.|||::.|..
plant   752 PKKGGVSGAFL-EIPYLRLFLGQFCNTYKMVEEPFNVDGFGFVFPIGSPLVADVSRAILKVAESP 815

  Fly   783 IIQILYDKWWKNTGDVC----NRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAI--FEFC 841
            ....|...|:|.....|    ...|.:....:..|.:::    |:.|..|:.|..|:|:  |.:|
plant   816 KAMELERAWFKKKEQSCPDPITNPDPNPSFTSRQLDIDS----FLFLFVGVLLVCVMALGNFTYC 876

  Fly   842 WNSRKN---LNTENQSLCSEMAEELRFAMHCHGSKSRHRPRKRSC-LNCSSV 889
            :.::..   |:....|.|               |.|:..|.||.. ||.|.|
plant   877 FLAKDQVSYLDKVEMSPC---------------SSSQQMPVKRKTQLNMSQV 913

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 69/384 (18%)
ANF_receptor 61..393 CDD:279440 65/363 (18%)
PBP2_iGluR_Kainate 424..793 CDD:270432 99/390 (25%)
Lig_chan 555..829 CDD:278489 71/296 (24%)
GLR2.3NP_001325281.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.920

Return to query results.
Submit another query.