DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and grik5

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_001315085.1 Gene:grik5 / 798791 ZFINID:ZDB-GENE-070821-6 Length:1067 Species:Danio rerio


Alignment Length:931 Identity:369/931 - (39%)
Similarity:524/931 - (56%) Gaps:89/931 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 IILSI-----LVISNALPP----------VIRVGAIFTEDERESSI-----ESAFKYAIYRINKE 72
            ::|||     ||....:||          .:|:.||..    :||:     ..|...|...||..
Zfish     7 LLLSIYFRFLLVTVVTMPPSSLSQTPVLSSVRMAAILD----DSSVCGRGERLALALARENINSV 67

  Fly    73 KTLLPNTQLVYDIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPTDA-LLASHVQSICEAYDIPHI- 135
            .......::..||..:.:|..:.||..:|..|..||.::.||..: ...|.|..||...:|||: 
Zfish    68 MENPARARVEVDIFELQKDSQYETTDTMCQILPKGVVSVIGPASSPASGSIVSHICGEKEIPHVK 132

  Fly   136 ---EGRIDLEYNSKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMH------S 191
               |....|.| .:..|:.||||:..|:||...|:...::...:::..:...|..|..      .
Zfish   133 IGPEETPRLPY-LRFASVTLYPSNEDLSLAIGSILRSFSYPSASLVCAKAECLLRLEELIRRFLI 196

  Fly   192 STETKAEMYIRQASPD-SYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFT 255
            |.||   :.||....: ....:|:.||..:|..||:|.|.|......:...:|.|....|.|:.|
Zfish   197 SRET---LSIRMLDDNLDPTPLLKEIRDDKIATIIIDANASISYLILKKASELGMTSAFYKYILT 258

  Fly   256 TFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFD 320
            |.|.....|:|......||..|.:.:.....|||.|..:......|.| ||..|.....|||:||
Zfish   259 TMDFPLLWLDDIVDEQSNIVGFSMFNTTHPFYLEFIRSLNLSWREGCD-INPYPGPALSSALLFD 322

  Fly   321 SVYAFANGLHFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQF-VEGRRNI 384
            :|:...:.:..||  ..|...:|.|||||.|.|..|.||.|.:.....|||||.|:| .:|:|..
Zfish   323 AVHVVVSAVQELN--RSQEIGVKPLSCTSPQIWQHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTN 385

  Fly   385 FKLDILKLKQEKIQKVGYWHPDD---------GVNISDPTAFYDSNIANITLVVMTREERPYVMV 440
            :.|.||:..:...:::|.|:.::         .:|:|:       .:||.:|::.|..|.||||.
Zfish   386 YTLHILEKHRGGHKEIGIWYSNNTLLMNSTSLDINVSE-------TLANKSLIITTILENPYVMR 443

  Fly   441 KED-KNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETN-SWNGIVQELMERRA 503
            |.: :...||.::||||:|:|:.::..:.|.|:|:||.|.:||.  ||.| ||.|:|.||:.|:|
Zfish   444 KINYQEFEGNEQYEGFCVDMLRELSDILKFTYRIKLVDDGLYGA--PEPNGSWTGMVGELINRKA 506

  Fly   504 DLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVS 568
            |||||:.||...||.||||:||||.|||.||::|...:....|||::|.:..:||::|.||:.||
Zfish   507 DLAVAAFTITSEREKVIDFSKPFMTLGISILYRVHIGRKPGYFSFLDPFSPAVWLFMLLAYLAVS 571

  Fly   569 FALFVMARFSPYEWKNPHPCYKE-TDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGC 632
            ..||:.||.|||||.|||||.:| .|::|||:::.||.||..|.|::|||.:.|:|.|||.|.|.
Zfish   572 CVLFLSARLSPYEWYNPHPCLRERRDLLENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGV 636

  Fly   633 WFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQK 697
            |:.|.|||||||||||||||||:||..||||..|||:||.|.|||:.||||||||.:|:...||:
Zfish   637 WWAFTLIIISSYTANLAAFLTVQRMEVPIESPDDLADQTNIQYGTIHGGSTMTFFMNSRYQTYQR 701

  Fly   698 MWRYMENRKTAVFVKTYEDGIKRVMEGSYAFLMESTMLDYAVQRDCNLTQIGGLLDSKGYGIATP 762
            ||.||.:::.:||||:.|:||.||:...||||:||||.:|....:|||||||||||:|||||..|
Zfish   702 MWNYMYSKQPSVFVKSTEEGIARVVNSKYAFLLESTMNEYHRSLNCNLTQIGGLLDTKGYGIGMP 766

  Fly   763 KGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLC 827
            .|||:||::|||:|:|||...::||..:||:  |..|   .|.::.:|..||:|||||:||||:|
Zfish   767 LGSPFRDELSLAVLQLQENNRLEILKRRWWE--GGKC---PKEEDHRAKGLGMENIGGIFVVLIC 826

  Fly   828 GLALAVVVAIFEFCWNSRKNLNTE---------------NQSLCSEMAEELRFAMHCHGSKSRHR 877
            ||.:||.||:.||.|::|::..|:               ..|:|.||..|.|.|:.|   |...|
Zfish   827 GLIIAVFVAVMEFVWSTRRSAETDEVRPLSCDRQYHSHTTVSVCQEMLTEFRNAVSC---KKSSR 888

  Fly   878 PRKRSCLNCSSVPTYVPSNVS 898
            .|:|..|: ||:....|:.::
Zfish   889 LRRRRPLS-SSLALRHPTRIT 908

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 111/392 (28%)
ANF_receptor 61..393 CDD:279440 104/344 (30%)
PBP2_iGluR_Kainate 424..793 CDD:270432 204/371 (55%)
Lig_chan 555..829 CDD:278489 158/274 (58%)
grik5NP_001315085.1 PBP1_iGluR_Kainate_KA1_2 38..412 CDD:107389 111/384 (29%)
ANF_receptor 55..392 CDD:279440 103/343 (30%)
Periplasmic_Binding_Protein_Type_1 <313..383 CDD:299141 29/71 (41%)
Periplasmic_Binding_Protein_Type_2 427..797 CDD:304360 204/371 (55%)
Lig_chan 558..828 CDD:278489 158/274 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591870
Domainoid 1 1.000 359 1.000 Domainoid score I916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.860

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