DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and gria1a

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_991161.1 Gene:gria1a / 798689 ZFINID:ZDB-GENE-020125-1 Length:914 Species:Danio rerio


Alignment Length:902 Identity:336/902 - (37%)
Similarity:503/902 - (55%) Gaps:90/902 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LKKICCSYIILSILVISNALPPVIRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYD 84
            |..:|.|::   .|...::.|..|.:|.:|..:..|..:   |::|:........|:|      .
Zfish     5 LTLLCTSFL---GLCFGSSFPSNINIGGLFPTESHEYEV---FRFALSHHQDIPKLVP------Q 57

  Fly    85 IEYVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSKEFS 149
            ::.|...:||..|...|||...||.||.|..|....:.:.|.|.|..:..:.....:| ||.:|.
Zfish    58 VDMVKLGNSFSMTYAFCSQFSKGVYAIIGVYDRKTVNMLMSFCGALHVCFVTPSFPME-NSNQFV 121

  Fly   150 INLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAE-------MYIRQASPD 207
            |.|.|.   |..|...::.:..|:|...:|..|.|| :::....:|.||       :.:...:..
Zfish   122 IQLRPE---LQDALVGVIEHYRWSKFVYMYSSDSGL-SVLQKVLDTAAEHNWLVTSVNVETMTEA 182

  Fly   208 SYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSV 272
            |:.:|.:.:.:|:..:||:|.....:.|..:.|::|..|...|||:.........||.:|:....
Zfish   183 SFLKVFQDLDKKKEGQIIIDCELERLTSILKKIIELGKNVKSYHYILANLGFLDIDLTEFKKGEA 247

  Fly   273 NITAFRLVDVDS-------KRYLEVINQ-----MQKLQHNGLDTINGSPYIQTESALMFDSVYAF 325
            |:|.|:||:...       ::::|..|:     .::|::.|..|.:|...:.|          ||
Zfish   248 NVTGFQLVNYADPNVSRTVQQWMEFDNKDAKVPKRRLKYTGALTYDGVKVMST----------AF 302

  Fly   326 ANGLHFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQFVE-GRRNIFKLDI 389
            .| |....:|..:..............|..||.:...:.....:||||.:||.| |||..:.:.:
Zfish   303 QN-LRRQRIDISRRGNAGECLANPPAPWGQGIDIQRALQQVRIEGLTGHIQFNEKGRRTNYSISV 366

  Fly   390 LKLKQEKIQKVGYWHPDDGVNISDPTAFYDSN----IANITLVVMTREERPYVMVKED-KNLTGN 449
            ::|:....:|||||:.|:.. :|.......||    :.|.|.:|.|..|.||||:|:: ::.|||
Zfish   367 MELRPTGPKKVGYWNEDEKF-VSTAAYMPGSNETYGLQNRTYIVTTILESPYVMLKKNHEHFTGN 430

  Fly   450 LRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASMTINY 514
            .::||:|::|...||..||:.|.:::|.|..||....||..|||:|.||:..:||:|||.:||..
Zfish   431 DKYEGYCVELAAEIAKHVGYHYILKIVADGKYGARDAETMMWNGMVGELVYGKADVAVAPLTITL 495

  Fly   515 ARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSP 579
            .||.||||:||||:|||.|:.|.||.....:|||::|||.|||:.::.|||.||..||:::||||
Zfish   496 VREEVIDFSKPFMSLGISIMIKKPTKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSP 560

  Fly   580 YEW----------KNPH-PCYKETDIVENQ-------------FSISNSFWFITGTFLRQGSGLN 620
            |||          :||: |........:||             |.|.||.||..|.|::||..::
Zfish   561 YEWHADDCEDGAEENPNQPSSSSAQPGQNQQNQNQQSQEQTNEFGIFNSLWFSLGAFMQQGCDIS 625

  Fly   621 PKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMT 685
            |::.|.|||||.|:||.||||||||||||||||||||:||||||.|||:||||:||||:.|||..
Zfish   626 PRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKE 690

  Fly   686 FFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRV--MEGSYAFLMESTMLDYAVQR-DCNLTQ 747
            |||.|||.:::|||.||::...:|||||.::|:.||  .:|.||:|:||||.:|..|| .|:..:
Zfish   691 FFRRSKIAVFEKMWSYMKSADPSVFVKTTDEGVMRVRKSKGKYAYLLESTMNEYIEQRKPCDTMK 755

  Fly   748 IGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANA 812
            :||.|||||||||||||||.|:.::||:|:|.|:|::..|.:|||.:.|: |.......:.|.:|
Zfish   756 VGGNLDSKGYGIATPKGSPLRNPVNLAVLKLNEQGLLDKLKNKWWYDKGE-CGSGGGDSKDKTSA 819

  Fly   813 LGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSLCSEMAEELRFAMHC 869
            |.:.|:.|||.:|:.||.||::||:.|||:.||    ||::    .|.:.:..||||
Zfish   820 LSLSNVAGVFYILIGGLGLAMLVALVEFCYKSR----TESR----RMKQSINDAMHC 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 94/385 (24%)
ANF_receptor 61..393 CDD:279440 84/351 (24%)
PBP2_iGluR_Kainate 424..793 CDD:270432 204/396 (52%)
Lig_chan 555..829 CDD:278489 151/300 (50%)
gria1aNP_991161.1 Periplasmic_Binding_Protein_Type_1 26..387 CDD:299141 94/386 (24%)
ANF_receptor 36..369 CDD:279440 85/357 (24%)
PBP2_iGluR_AMPA_GluR1 404..806 CDD:270447 206/402 (51%)
Lig_chan 536..836 CDD:278489 151/300 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591501
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.650

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