DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and grid1a

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_021323097.1 Gene:grid1a / 793756 ZFINID:ZDB-GENE-120411-28 Length:1044 Species:Danio rerio


Alignment Length:893 Identity:254/893 - (28%)
Similarity:442/893 - (49%) Gaps:113/893 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LSILVISNAL----------PPVIRVGAIFTEDE-RESSIESAFKYAIYRINKEKTLLPNTQLVY 83
            :.:||||.:|          ..:|.:||||.::. |:..:   |:.||..::....:|.:.::.:
Zfish     1 MELLVISLSLWILQCRSARADSIIHIGAIFEQNAIRDDEV---FQLAISDLSLNDDILQSERITH 62

  Fly    84 DIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNS--- 145
            .|:.:..::.|:..::.|..:..|:.|:...|....|:.:||:.:|..|||    :.::.|.   
Zfish    63 SIKLIEPNNPFQAVQEACELMNQGILALVSSTGCAAANALQSLTDAMHIPH----LFIQRNGDGT 123

  Fly   146 --KEFSINLYPSHTLLTLAYR------DIMV----YLNWTKVAIIYEEDY---GLFNLMHSSTET 195
              .|..:|..|.....|||.|      |:|:    .|.|.|..:.|:.:|   ||...:..::..
Zfish   124 PRAECQLNPSPDGERYTLAARPPVRLNDVMITLVSELRWHKFIVFYDSEYDVRGLRGFLDQASRM 188

  Fly   196 KAEMYIRQASP------------------DSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQ 242
            ..::.::|...                  :.||..||        :.|:..:|...:.|....::
Zfish   189 GLDVSLQQVDRNVTKVFSTLFSTMRMEELNRYRDTLR--------RAILLLSPRTAQVFIHQAVE 245

  Fly   243 LQMNDHRYHYMFTTFDLETYDLEDFRYNSV-NITAFRLV-----DVDSKRYLEVINQMQKLQHNG 301
            ..:.....|:::...::...::.:..:::: .:|..|.:     |.:    :..:....::....
Zfish   246 TNLASKDSHWVYANEEVSDTEIMELVHSALGRMTVIRQIFPLWRDTN----IRCMRNNHRISSLL 306

  Fly   302 LDTINGSPYIQT---ESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSC--TSDQTWNDGISLYN 361
            .|...|  |:|:   .|..::|||...||.. :..|::.:...:.:|:|  .|.:.||.|.|:.:
Zfish   307 CDPQEG--YLQSLEVSSLYLYDSVLMLANAF-YRKLEDRKWHSMASLNCMRKSTKPWNGGWSMLD 368

  Fly   362 QINAAITDGLTGTVQF-VEGRRNIFKLDILKLKQEK-----IQKVGYWHPDDGVNISDPTAFYDS 420
            .|......||||.:.| ..|..:..:.:||.....:     ::::..|..|.|:|.|......|.
Zfish   369 TIQKGRISGLTGLMDFRSNGANSHVQFEILGTSYSETFGKDVKRLATWDSDRGLNGSLRENRADH 433

  Fly   421 NIANITLVVMTREERPYVMVKEDKNLTGN-LRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVY 484
            .:..|||.|:|..|.|:|||.|  |:.|. .|::||.||:|.|:|..:||:|::..|.|..||  
Zfish   434 GMQGITLKVVTLLEEPFVMVAE--NILGQPKRYKGFSIDVLDALAKILGFKYEMYQVADAKYG-- 494

  Fly   485 IPETN-SWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSF 548
            .|:|| ||||::.||:.:|||:|::::||...||:|:||:|.:::..:|||. ..|.:...:||.
Zfish   495 SPQTNGSWNGMIGELIGKRADVAISAITITPERENVVDFSKRYLDYSVGILM-TKTEERLNIFSL 558

  Fly   549 MNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFWFITGTFL 613
            :.|..:.:|..:.||..:|...:|::.|......:||...::...:..   |..::.|.:.|.|:
Zfish   559 LAPFDLAVWACIAAAIPVVGVMVFLLRRVQSVRSQNPPGPHQPASVTT---SFQSAIWIVYGAFV 620

  Fly   614 RQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTL 678
            :||......:.:.||..|.|:.|.||:.|||||||||:|||.||.:.|.:..||::|:||:|||:
Zfish   621 QQGGESFMSSMALRIAMGSWWLFTLIVCSSYTANLAAYLTVSRMDNAIRTFQDLSKQSEINYGTV 685

  Fly   679 EGGSTMTFFR---------DSKIGIYQKMWRYM-ENRKTAVFVKTYEDGIKRVMEGSYAFLMEST 733
            ...:...:||         ||   .:.::||.: :|:.....|.:..:||::|....||||.:..
Zfish   686 RESAVFEYFRVKGTNPLEQDS---TFAELWRTINKNQGQDNSVTSPAEGIRKVKRDPYAFLWDMA 747

  Fly   734 MLDYA--VQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTG 796
            :|:||  ...||.|...|..:.|||||:|...|||:||..|..||:|||||.:.||..|||...|
Zfish   748 VLEYAALTDDDCTLVVTGNGMSSKGYGLALQHGSPYRDLFSQKILDLQEKGDLDILKQKWWPRKG 812

  Fly   797 DVCNRDDKSK-ESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWN 843
            . |:.|..:: :::..||.:.:..|||.:|..||.||.:||..|..||
Zfish   813 R-CDLDKHAEPQTEGRALRLHSFAGVFCILAAGLLLACLVAALESWWN 859

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 81/419 (19%)
ANF_receptor 61..393 CDD:279440 73/379 (19%)
PBP2_iGluR_Kainate 424..793 CDD:270432 145/382 (38%)
Lig_chan 555..829 CDD:278489 99/286 (35%)
grid1aXP_021323097.1 Periplasmic_Binding_Protein_Type_1 25..424 CDD:324556 81/420 (19%)
PBP2_iGluR_delta_1 437..809 CDD:270448 145/382 (38%)
DNA_pol3_gamma3 <915..1044 CDD:331207
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591152
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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