DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and Grid1

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_077354.1 Gene:Grid1 / 79219 RGDID:68366 Length:1009 Species:Rattus norvegicus


Alignment Length:901 Identity:263/901 - (29%)
Similarity:447/901 - (49%) Gaps:114/901 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 VIRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYDIEYVPRDDSFRTTKKVCSQLEA 106
            :|.:||||  :|..:..:..|:.|:..::....:|.:.::.|.|:.:..::.|:..::.|..:..
  Rat    23 IIHIGAIF--EENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKVIEANNPFQAVQEACDLMTQ 85

  Fly   107 GVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYN---SKEFSINLYPS--HTLLTLAYR-- 164
            |:.|:...|....|:.:||:.:|..|||    :.::.|   |...:.:|.||  ....|||.|  
  Rat    86 GILALVTSTGCASANALQSLTDAMHIPH----LFVQRNPGGSPRTACHLNPSPDGEAYTLASRPP 146

  Fly   165 ----DIMV----YLNWTKVAIIYEEDY---GLFNLMHSSTETKAEMYIRQASP------------ 206
                |:|:    .|.|.|..:.|:.:|   ||.:.:..::....::.:::...            
  Rat   147 VRLNDVMLRLVTELRWQKFVMFYDSEYDIRGLQSFLDQASRLGLDVSLQKVDKNISHVFTSLFTT 211

  Fly   207 ------DSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLE 265
                  :.||..||        :.|:..:|....||....::..:.....|::|...::...::.
  Rat   212 MKTEELNRYRDTLR--------RAILLLSPQGAHSFINEAVETNLASKDSHWVFVNEEISDPEIL 268

  Fly   266 DFRYNSV-NITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSP------YIQTESALMFDSVY 323
            |..:::: .:|..|.:...:|.     ||.....::.:.::...|      .:|..:..::|||.
  Rat   269 DLVHSALGRMTVVRQIFPSAKD-----NQKCMRNNHRISSLLCDPQEGYLQMLQISNLYLYDSVL 328

  Fly   324 AFANGLHFLNLDNHQNFYIKNLSC--TSDQTWNDGISLYNQINAAITDGLTGTVQFVEGRRNIF- 385
            ..||..| ..|::.:...:.:|:|  .|.:.||.|.|:.:.|......||||.::|.|...|.: 
  Rat   329 MLANAFH-RKLEDRKWHSMASLNCIRKSTKPWNGGRSMLDTIKKGHITGLTGVMEFREDSSNPYV 392

  Fly   386 KLDILKLKQEK-----IQKVGYWHPDDGVNISDPTAFYDSNIANITLVVMTREERPYVMVKEDKN 445
            :.:||.....:     ::|:..|..:.|:|.|.......|.:..:||.|:|..|.|:|||.|  |
  Rat   393 QFEILGTTYSETFGKDMRKLATWDSEKGLNGSLQERPMGSRLQGLTLKVVTVLEEPFVMVAE--N 455

  Fly   446 LTGN-LRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVAS 509
            :.|. .|::||.||:|.|:|..:||:|:|...||..||..:..| ||||::.||:.:|||||:::
  Rat   456 ILGQPKRYKGFSIDVLDALAKALGFKYEIYQAPDGRYGHQLHNT-SWNGMIGELISKRADLAISA 519

  Fly   510 MTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVM 574
            :||...||||:||:|.:|:..:|||.|.| .:...:||...|....:|..:.||..:|...:||:
  Rat   520 ITITPERESVVDFSKRYMDYSVGILIKKP-EEKISIFSLFAPFDFAVWACIAAAIPVVGVLIFVL 583

  Fly   575 ARFSPYEWKN---PHPCYKETDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFF 636
            .|......::   |.|....|        :.::.|.:.|.|::||...:..:.:.|||.|.|:.|
  Rat   584 NRIQAVRSQSATQPRPSASAT--------LHSAIWIVYGAFVQQGGESSVNSVAMRIVMGSWWLF 640

  Fly   637 CLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFR---------DSKI 692
            .||:.|||||||||||||.||.||:.:..||::|.|:||||:...:...:||         ||  
  Rat   641 TLIVCSSYTANLAAFLTVSRMDSPVRTFQDLSKQLEMSYGTVRDSAVYEYFRAKGTNPLEQDS-- 703

  Fly   693 GIYQKMWRYM-ENRKTAVFVKTYEDGIKRVMEGSYAFLMESTMLDYA--VQRDCNLTQIGGLLDS 754
             .:.::||.: :|......|....:||::..:|:||||.:..:::||  ...||::|.||..:.|
  Rat   704 -TFAELWRTISKNGGADNCVSNPSEGIRKAKKGNYAFLWDVAVVEYAALTDDDCSVTVIGNSISS 767

  Fly   755 KGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIG 819
            ||||||...|||:||..|..|||||:.|.:.:|..|||.:||........|.::...:|.:.:..
  Rat   768 KGYGIALQHGSPYRDLFSQRILELQDTGDLDVLKQKWWPHTGRCDLTSHSSAQTDGKSLKLHSFA 832

  Fly   820 GVFVVLLCGLALAVVVAIFEFCWNSRK------------NLNTENQSLCSEMAEEL 863
            |||.:|..||.||.:||..|..|||.:            ||...::.:.|.|.|::
  Rat   833 GVFCILAIGLLLACLVAALELWWNSNRCHQETPKEDKEVNLEQVHRRINSLMDEDI 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 85/416 (20%)
ANF_receptor 61..393 CDD:279440 77/377 (20%)
PBP2_iGluR_Kainate 424..793 CDD:270432 150/384 (39%)
Lig_chan 555..829 CDD:278489 101/288 (35%)
Grid1NP_077354.1 Interaction with CBLN1. /evidence=ECO:0000250|UniProtKB:Q61627 21..436 89/432 (21%)
PBP1_iGluR_delta_1 25..423 CDD:107387 85/417 (20%)
ANF_receptor 41..400 CDD:279440 77/376 (20%)
PBP2_iGluR_delta_1 436..806 CDD:270448 150/384 (39%)
Lig_chan 564..841 CDD:278489 101/287 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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