DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and grik1b

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_690040.5 Gene:grik1b / 561540 ZFINID:ZDB-GENE-070821-1 Length:906 Species:Danio rerio


Alignment Length:894 Identity:398/894 - (44%)
Similarity:565/894 - (63%) Gaps:60/894 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RKKREIVIKENIQGRSYLKKICCSYIILSILV-ISNALPPVIRVGAIF--TEDERESSIESAFKY 64
            |:|.::.:|.:.:..:.||:...|:|:|.::. :..:...|:|:|.||  .|:|..|..|.|||:
Zfish    23 RRKTDMDVKCSSRRCALLKRTGVSFILLCLMAEVGLSAQQVLRIGGIFETLENEPISVEELAFKF 87

  Fly    65 AIYRINKEKTLLPNTQLVYDIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEA 129
            |:..||:.:||:|||.|.|||:.:...|||..:::.|.||..||.|:|||:.:...|.|||||.|
Zfish    88 AVTNINRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAAVFGPSHSSSVSAVQSICNA 152

  Fly   130 YDIPHIEGR-----IDLEYNSKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLF--- 186
            .::|||:.|     :|   |...|.|||||.:..::.|..||:.:..|..|.::||:..||.   
Zfish   153 LEVPHIQTRWKHPSVD---NKDSFYINLYPDYASISRAVLDIVQFYKWKAVTVVYEDATGLIRLQ 214

  Fly   187 NLMHSSTETKAEMYIRQ---ASPDSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDH 248
            .|:.:.:....::.|||   .|.|: |.:|:.:::.:.:.:|.|.:........:.:|.:.|...
Zfish   215 ELIKAPSRYSIKIKIRQLPTGSKDA-RPLLKEMKKGKEFCVIFDCSYQTAADVLKQLLSMGMMTE 278

  Fly   249 RYHYMFTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQ--MQKLQ-----HNGLDTIN 306
            .||:.|||.||.:.|||.|||:.||:|.|||:::|:.:...|:.:  |::||     ..||.   
Zfish   279 YYHFFFTTLDLYSLDLEPFRYSGVNMTGFRLLNIDNPQVASVVEKWSMERLQAPPKPETGLQ--- 340

  Fly   307 GSPYIQTESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGL 371
             ...:.||:|||:|:||..|..     ........:.:|.|...:.|..|....:....|..:||
Zfish   341 -DGMMTTEAALMYDAVYMVAAA-----SQRASQITVSSLQCHRHKPWRFGSRFISMFKEAQWNGL 399

  Fly   372 TG--TVQFVEGRRNIFKLDILKLKQEKIQ-------------KVGYWHPDDGVNISDPTAFYDSN 421
            ||  .:...:|.|..|.|||:.||::.::             |:|.|:.:.|:|::|.....::|
Zfish   400 TGQIIINKTDGLRKDFDLDIISLKEDGLEKPLESGRFNKVWKKIGVWNSNTGLNLTDSNKDKNTN 464

  Fly   422 I----ANITLVVMTREERPYVMVKE-DKNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDNMY 481
            :    ||.||:|.|..|.||||.|: ||.|.||.||||:|:||||.::..:||.|:::||.|..|
Zfish   465 VTDSMANRTLIVTTILENPYVMYKKSDKPLYGNDRFEGYCLDLLKELSNILGFSYEVKLVTDGKY 529

  Fly   482 GVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLF 546
            |.. .:...|||:|:||::..||||||.:||.|.||.||||:||||.|||.||:..|......:|
Zfish   530 GAQ-NDKGEWNGMVRELIDHVADLAVAPLTITYVREKVIDFSKPFMTLGISILYHKPNGTNPGVF 593

  Fly   547 SFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFWFITGT 611
            ||:|||:.:||:|||.|.:.||..|||:|||:||||.|||||..::|:|||.|::.||.||..|.
Zfish   594 SFLNPLSPDIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLINSVWFGVGA 658

  Fly   612 FLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYG 676
            .::|||.|.|||.|||||||.|:||.||||||||||||||||||||.|||:||.|||:||:|.||
Zfish   659 LMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMDSPIDSADDLAKQTKIEYG 723

  Fly   677 TLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRVMEGSYAFLMESTMLDYAVQR 741
            .:..|||||||:.|||..|:|||.:|.:||....||...:||:||:...||.|||||.::|..||
Zfish   724 AVRDGSTMTFFKKSKISTYEKMWAFMSSRKNTALVKNNREGIQRVLTTDYALLMESTSIEYISQR 788

  Fly   742 DCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSK 806
            :|||||||||:||||||:.||.|||:|||:::|||:|||:|.:.::.:|||:..|  |..:| ||
Zfish   789 NCNLTQIGGLIDSKGYGVGTPIGSPYRDKVTIAILQLQEEGKLHMMKEKWWRGNG--CPEED-SK 850

  Fly   807 ESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSL 855
            |  |:|||||||||:|:||..||.|:|.|||.||.:.|||||:.|..|:
Zfish   851 E--ASALGVENIGGIFIVLAAGLVLSVFVAIGEFIYKSRKNLDIEEVSV 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 131/400 (33%)
ANF_receptor 61..393 CDD:279440 117/351 (33%)
PBP2_iGluR_Kainate 424..793 CDD:270432 218/369 (59%)
Lig_chan 555..829 CDD:278489 168/273 (62%)
grik1bXP_690040.5 Periplasmic_Binding_Protein_Type_1 62..455 CDD:299141 133/405 (33%)
ANF_receptor 80..423 CDD:279440 118/355 (33%)
Periplasmic_Binding_Protein_Type_2 471..840 CDD:304360 218/369 (59%)
Lig_chan 602..871 CDD:278489 168/273 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591609
Domainoid 1 1.000 359 1.000 Domainoid score I916
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H68992
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.860

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