Protein Alignment CG11155 and grid1b

DIOPT Version :10

• Sequence 1: NP_651941.2
• Gene: CG11155 / 43822
• FlyBaseID: FBgn0039927
• Length: 910
• Species: Drosophila melanogaster
• Sequence 2: XP_009304811.1
• Gene: grid1b / 557511
• ZFINID: ZDB-GENE-121214-84
• Length: 1048
• Species: Danio rerio
• Alignment Length: 959
• Identity: 279/959 - (29%)
• Similarity: 460/959 - (47%)
• Gaps: 138/959 - (14%)

  Fly    23 ICCSYIILSILVISNA-LPPVIRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYDIE 86
            ||.|:   .||..|:| ...:|.:||||  :|..:..:..|:.||..::....:|.:.::.:.|:
Zfish     6 ICLSF---GILQCSSAGADSIIHIGAIF--EENAARDDEVFQLAISDLSLNDDILQSEKITHSIK 65

  Fly    87 YVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSK-EFSI 150
            |:..::.|:..::.|..:..|:.|:...|....||.:||:.:|..|||:..:.:.|.:.: ...:
Zfish    66 YIEPNNPFQAVQEACELMTQGILALVTSTGCASASALQSLTDAMHIPHLYVQRNAEGSPRTACQL 130

  Fly   151 NLYPSHTLLTLAYR------DIMV----YLNWTKVAIIYEEDY---------------------- 183
            |..|.....|||.|      |:|:    .|.|.|..:.|:.||
Zfish   131 NPSPDGERYTLAARPPVRLGDVMLTLVGELRWQKFIVFYDSDYDIRGLQVFLDQTSRQGLDVSLQ 195

  Fly   184 -------GLFNLMHSSTETKAEMYIRQASPDSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSIL 241
                   |:|:.:.:|..|: |:       :.||..||        :.|:..:|...:.|....:
Zfish   196 RVDRNISGVFSSLFTSMRTE-EL-------NRYRDTLR--------RAILLLSPRGAQVFIHQAV 244

  Fly   242 QLQMNDHRYHYMFTTFDLETYDLEDFRYNSV-NITAFRLV-------DVDSKRYLEVINQMQKLQ 298
            :..:.....|::|...::...::.:..::|: .:|..|.:       .|...|....|:.:....
Zfish   245 ETNLASKDSHWVFVNEEISDTEILELAHSSLGRMTVVRQIFPLWRDSSVSCMRNSHRISSLLCDP 309

  Fly   299 HNGLDTINGSPYIQT---ESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSC--TSDQTWNDGIS 358
            ..|        |:|:   .:..::|||...||.. :..|::.:...:.:|:|  .|.:.||.|.|
Zfish   310 QEG--------YLQSLEVSNLYLYDSVLMLANAF-YRKLEDRKWHSMASLNCIRKSTKPWNGGWS 365

  Fly   359 LYNQINAAITDGLTGTVQFVE-GRRNIFKLDIL-----KLKQEKIQKVGYWHPDDGVNISDPTAF 417
            :...|......||||.:.|:| |..:..:.:||     :...:.|:::..|....|:|.|...:.
Zfish   366 MLETIQKGRITGLTGIMDFMENGSNSHVQFEILGTSFSETFGKDIKRLATWDSVHGLNGSLKESR 430

  Fly   418 YDSNIANITLVVMTREERPYVMVKEDKNLTGN-LRFEGFCIDLLKAIATQVGFQYKIELVPDNMY 481
            .::.:..:|:.|:|..|.|:|||.|  |:.|. .|::||.||:|:|:|..:||:|.|..|.|:.|
Zfish   431 IENGMQGVTVKVVTLLEDPFVMVAE--NILGQPKRYKGFSIDVLEALAKILGFKYDIYQVADSKY 493

  Fly   482 GVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLF 546
            |..: ...||||::.||:.:||||||:::||...||:|:||:|.:|:..:|||.:.| .:...:|
Zfish   494 GSQL-SNGSWNGMIGELINKRADLAVSAITITPERENVVDFSKRYMDYSVGILHRKP-EEKINIF 556

  Fly   547 SFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFWFITGT 611
            |...|..:.:|..:.||..:|...:|::.|......:|| |.......:.|  |:.::.|.:.|.
Zfish   557 SLFAPFDLAVWACIAAAIPVVGVLIFLLTRMQMLRSQNP-PGAHHASSMSN--SLHSAIWIVYGA 618

  Fly   612 FLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYG 676
            |::||......:.:.|||.|.|:.|.||:.|||||||||||||.||.:.|.:..|||.|.:.:||
Zfish   619 FVQQGGDSVVGSVALRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNTIRTFQDLARQMDFAYG 683

  Fly   677 TLEGGSTMTFFR---------DSKIGIYQKMWRYMENRKTAVF-VKTYEDGIKRVMEGSYAFLME 731
            |:...:...:|:         ||   .|.::||.:.......| |.:..:||::..:|.||||.:
Zfish   684 TVRDSAVYDYFKAKGTNPLEQDS---TYAELWRTISKNNGQDFSVSSPSEGIRKAKKGPYAFLWD 745

  Fly   732 STMLDYA--VQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKN 794
            ..:::||  ...||.:|..|..:.|||||||...|||:||.||..||||||||.:.:|..|||..
Zfish   746 MAVVEYAALTDDDCTITVSGNSMSSKGYGIAMQHGSPYRDLISQKILELQEKGDLDVLKQKWWPR 810

  Fly   795 TGDVCNRDDKSKESKA----NALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSL 855
            ||    |.|.:..|.|    .:|.:.:..|||.:|..||.||.:||..|..|||    |...|..
Zfish   811 TG----RCDLNSHSNAQPDGRSLKLHSFAGVFCILAAGLLLACLVAALEMWWNS----NRCRQEQ 867

  Fly   856 CSEMAEELRFA-------------MHCHGSKSRHRPRKRSCLNCSSVPT 891
            ..|:.::.|.|             ....|||.....|:|......::.|
Zfish   868 PKEVTKDYRLARVSGPLTYNDIATASSEGSKDIWTDRERDWDEAEAIDT 916

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG11155	NP_651941.2	PBP1_iGluR_Kainate	44..413	CDD:380605	89/427 (21%)
		PBP2_iGluR_Kainate	424..793	CDD:270432	148/381 (39%)
		Lig_chan	554..828	CDD:459656	105/289 (36%)
grid1b	XP_009304811.1	PBP1_iGluR_delta_1	25..426	CDD:380615	89/427 (21%)
		Periplasmic_Binding_Protein_Type_2	437..809	CDD:473866	148/381 (39%)