DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and grid1b

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_009304811.1 Gene:grid1b / 557511 ZFINID:ZDB-GENE-121214-84 Length:1048 Species:Danio rerio


Alignment Length:959 Identity:279/959 - (29%)
Similarity:460/959 - (47%) Gaps:138/959 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ICCSYIILSILVISNA-LPPVIRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYDIE 86
            ||.|:   .||..|:| ...:|.:||||  :|..:..:..|:.||..::....:|.:.::.:.|:
Zfish     6 ICLSF---GILQCSSAGADSIIHIGAIF--EENAARDDEVFQLAISDLSLNDDILQSEKITHSIK 65

  Fly    87 YVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSK-EFSI 150
            |:..::.|:..::.|..:..|:.|:...|....||.:||:.:|..|||:..:.:.|.:.: ...:
Zfish    66 YIEPNNPFQAVQEACELMTQGILALVTSTGCASASALQSLTDAMHIPHLYVQRNAEGSPRTACQL 130

  Fly   151 NLYPSHTLLTLAYR------DIMV----YLNWTKVAIIYEEDY---------------------- 183
            |..|.....|||.|      |:|:    .|.|.|..:.|:.||                      
Zfish   131 NPSPDGERYTLAARPPVRLGDVMLTLVGELRWQKFIVFYDSDYDIRGLQVFLDQTSRQGLDVSLQ 195

  Fly   184 -------GLFNLMHSSTETKAEMYIRQASPDSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSIL 241
                   |:|:.:.:|..|: |:       :.||..||        :.|:..:|...:.|....:
Zfish   196 RVDRNISGVFSSLFTSMRTE-EL-------NRYRDTLR--------RAILLLSPRGAQVFIHQAV 244

  Fly   242 QLQMNDHRYHYMFTTFDLETYDLEDFRYNSV-NITAFRLV-------DVDSKRYLEVINQMQKLQ 298
            :..:.....|::|...::...::.:..::|: .:|..|.:       .|...|....|:.:....
Zfish   245 ETNLASKDSHWVFVNEEISDTEILELAHSSLGRMTVVRQIFPLWRDSSVSCMRNSHRISSLLCDP 309

  Fly   299 HNGLDTINGSPYIQT---ESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSC--TSDQTWNDGIS 358
            ..|        |:|:   .:..::|||...||.. :..|::.:...:.:|:|  .|.:.||.|.|
Zfish   310 QEG--------YLQSLEVSNLYLYDSVLMLANAF-YRKLEDRKWHSMASLNCIRKSTKPWNGGWS 365

  Fly   359 LYNQINAAITDGLTGTVQFVE-GRRNIFKLDIL-----KLKQEKIQKVGYWHPDDGVNISDPTAF 417
            :...|......||||.:.|:| |..:..:.:||     :...:.|:::..|....|:|.|...:.
Zfish   366 MLETIQKGRITGLTGIMDFMENGSNSHVQFEILGTSFSETFGKDIKRLATWDSVHGLNGSLKESR 430

  Fly   418 YDSNIANITLVVMTREERPYVMVKEDKNLTGN-LRFEGFCIDLLKAIATQVGFQYKIELVPDNMY 481
            .::.:..:|:.|:|..|.|:|||.|  |:.|. .|::||.||:|:|:|..:||:|.|..|.|:.|
Zfish   431 IENGMQGVTVKVVTLLEDPFVMVAE--NILGQPKRYKGFSIDVLEALAKILGFKYDIYQVADSKY 493

  Fly   482 GVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLF 546
            |..: ...||||::.||:.:||||||:::||...||:|:||:|.:|:..:|||.:.| .:...:|
Zfish   494 GSQL-SNGSWNGMIGELINKRADLAVSAITITPERENVVDFSKRYMDYSVGILHRKP-EEKINIF 556

  Fly   547 SFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFWFITGT 611
            |...|..:.:|..:.||..:|...:|::.|......:|| |.......:.|  |:.::.|.:.|.
Zfish   557 SLFAPFDLAVWACIAAAIPVVGVLIFLLTRMQMLRSQNP-PGAHHASSMSN--SLHSAIWIVYGA 618

  Fly   612 FLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYG 676
            |::||......:.:.|||.|.|:.|.||:.|||||||||||||.||.:.|.:..|||.|.:.:||
Zfish   619 FVQQGGDSVVGSVALRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNTIRTFQDLARQMDFAYG 683

  Fly   677 TLEGGSTMTFFR---------DSKIGIYQKMWRYMENRKTAVF-VKTYEDGIKRVMEGSYAFLME 731
            |:...:...:|:         ||   .|.::||.:.......| |.:..:||::..:|.||||.:
Zfish   684 TVRDSAVYDYFKAKGTNPLEQDS---TYAELWRTISKNNGQDFSVSSPSEGIRKAKKGPYAFLWD 745

  Fly   732 STMLDYA--VQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKN 794
            ..:::||  ...||.:|..|..:.|||||||...|||:||.||..||||||||.:.:|..|||..
Zfish   746 MAVVEYAALTDDDCTITVSGNSMSSKGYGIAMQHGSPYRDLISQKILELQEKGDLDVLKQKWWPR 810

  Fly   795 TGDVCNRDDKSKESKA----NALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSL 855
            ||    |.|.:..|.|    .:|.:.:..|||.:|..||.||.:||..|..|||    |...|..
Zfish   811 TG----RCDLNSHSNAQPDGRSLKLHSFAGVFCILAAGLLLACLVAALEMWWNS----NRCRQEQ 867

  Fly   856 CSEMAEELRFA-------------MHCHGSKSRHRPRKRSCLNCSSVPT 891
            ..|:.::.|.|             ....|||.....|:|......::.|
Zfish   868 PKEVTKDYRLARVSGPLTYNDIATASSEGSKDIWTDRERDWDEAEAIDT 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 88/424 (21%)
ANF_receptor 61..393 CDD:279440 80/390 (21%)
PBP2_iGluR_Kainate 424..793 CDD:270432 148/381 (39%)
Lig_chan 555..829 CDD:278489 105/289 (36%)
grid1bXP_009304811.1 PBP1_iGluR_delta_1 25..424 CDD:107387 88/425 (21%)
ANF_receptor 36..400 CDD:279440 80/388 (21%)
Periplasmic_Binding_Protein_Type_2 437..809 CDD:304360 148/381 (39%)
Lig_chan 565..840 CDD:278489 104/284 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591150
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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