DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and grik4

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_021322087.1 Gene:grik4 / 556582 ZFINID:ZDB-GENE-070821-5 Length:965 Species:Danio rerio


Alignment Length:879 Identity:345/879 - (39%)
Similarity:515/879 - (58%) Gaps:40/879 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 ISNAL--PPVIRVGAIFTEDERESS--IESAFKYAIYRINKEKTLLPNTQLVYDIEYVPRDDSFR 95
            :.||.  |...|:.||. :|..|.|  ...|...|...||:........:|..||..:.||..:.
Zfish    15 VRNATSGPLSFRIAAIL-DDPMECSRGERLAITLAKDSINRSSNRSTTGKLEVDIFELLRDSEYE 78

  Fly    96 TTKKVCSQLEAGVQAIFGPTDALLASH--VQSICEAYDIPHI----EGRIDLEYNSKEFSINLYP 154
            |.:.:|..:..||.|:.||: |..||:  :.:||...::|::    |..:.::: .:..:::|.|
Zfish    79 TGETMCQIMSKGVVAVLGPS-ASPASNSIISNICGEKEVPYVKVAPEDILKVQF-PRFTTLDLRP 141

  Fly   155 SHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFN---LMHSSTETKAEMYIRQASPDSY--RQVLR 214
            ::|.:::|...::.:.|.:...:|..:...|.|   |:.....:|..:.:|... ||.  ..:|:
Zfish   142 TNTDISMAVAGLLTFFNSSTSCLICAQADCLLNLEVLLRQFLISKETLSVRMLD-DSQDPTPLLK 205

  Fly   215 AIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSVNITAFRL 279
            .||..:...||||.|.:..........:|.|....|.|:.|:.:.....|:|.....|||..|.:
Zfish   206 EIRDDKTATIIVDANATMSHVILERASELGMLSVYYTYILTSLEFSLLRLDDLADQRVNIVGFSV 270

  Fly   280 VDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQT--ESALMFDSVYAFANGLHFLNLDNHQNFYI 342
            .:.....:.:.:..:.:......|   .:|:..|  .|||:||:|:.....:..||  ..||...
Zfish   271 FNRTHPFFQDFVLSLNRSWQENCD---HAPFAGTPLSSALLFDAVHTVVAAVQELN--RSQNVGA 330

  Fly   343 KNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQF-VEGRRNIFKLDILKLKQEKIQKVGYWHPD 406
            ..|||.|.:.|..|.||.|.:.....:||||.::| .:|:|:.:.|.|::..::.::::|.||.:
Zfish   331 TQLSCKSSKIWEHGTSLMNYLRMVELEGLTGHIEFNSKGQRSNYALRIMQNSRDGLRQIGQWHSE 395

  Fly   407 DGVNISD--PTAFYDSNIANITLVVMTREERPYVMVKED-KNLTGNLRFEGFCIDLLKAIATQVG 468
            .|:::..  |:......:.|.||.:.|..|.||||::.: :.|.||.|:||||:|:||.:|..:.
Zfish   396 QGLSMERKLPSLNVTDTLFNTTLTITTILENPYVMLRANHQELEGNDRYEGFCVDMLKELADILK 460

  Fly   469 FQYKIELVPDNMYGVYIPETN-SWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIG 532
            |:|:|.||.|.:|||  |..| :|.|:|.||:.|:||||||::||...||.||||:||||.|||.
Zfish   461 FKYRIRLVGDGVYGV--PGANGTWTGMVGELISRKADLAVAALTITAEREKVIDFSKPFMTLGIS 523

  Fly   533 ILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYK-ETDIVE 596
            |:::|...:....|||::|.:..:||::|.||:.||..||::||.:||||.|||||.| ...::.
Zfish   524 IMYRVHIGRRPGYFSFLDPFSPGVWLFMLLAYLAVSCVLFLVARLTPYEWYNPHPCLKGRCSLLI 588

  Fly   597 NQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPI 661
            ||:|:.|||||..|.|::|||.:.|:|.|||.|.|.|:.|.|||||||||||||||||:||..||
Zfish   589 NQYSLGNSFWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPI 653

  Fly   662 ESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRVMEGSY 726
            ||..|||:||.|.|||:.||||||||::|:...||:||.:|.:::.:||||:.|:||.||:..:|
Zfish   654 ESVDDLADQTAIEYGTMHGGSTMTFFQNSRYQTYQRMWNFMYSKQPSVFVKSTEEGIARVLNSNY 718

  Fly   727 AFLMESTMLDYAVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKW 791
            |:|:||||.:|..||:|||||||||||:|||||..|.||.:||:..||||.|||:..::||..||
Zfish   719 AYLLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPLGSVYRDEFDLAILRLQEENRLEILKRKW 783

  Fly   792 WKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSLC 856
            |  .|..|   .|.::.:|..||:|||||:||||:|||.:|:.:|:.||.|..|....|| .|:|
Zfish   784 W--DGGKC---PKEEDHRAKGLGMENIGGIFVVLVCGLLVAIFMAVLEFVWMLRHTPGTE-LSVC 842

  Fly   857 SEMAEELRFAMHCHGSKSRHRPRKRSCLNCSSVP 890
            .||..||:..:.|..|....|.|..|.|....:|
Zfish   843 EEMLRELQGIVLCQDSLQLRRRRGASVLRPQPLP 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 96/381 (25%)
ANF_receptor 61..393 CDD:279440 86/345 (25%)
PBP2_iGluR_Kainate 424..793 CDD:270432 205/371 (55%)
Lig_chan 555..829 CDD:278489 157/274 (57%)
grik4XP_021322087.1 Periplasmic_Binding_Protein_Type_1 26..400 CDD:324556 96/382 (25%)
PBP2_iGluR_kainate_KA1 425..785 CDD:270442 202/363 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590982
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.660

Return to query results.
Submit another query.