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Protein Alignment CG11155 and Gria1

DIOPT Version :9

Sequence 1:	NP_651941.2	Gene:	CG11155 / 43822	FlyBaseID:	FBgn0039927	Length:	910	Species:	Drosophila melanogaster
Sequence 2:	NP_113796.1	Gene:	Gria1 / 50592	RGDID:	621531	Length:	907	Species:	Rattus norvegicus

Alignment Length:	841	Identity:	334/841 - (39%)
Similarity:	486/841 - (57%)	Gaps:	52/841 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly    34 VISNALPPVIRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYDIEYVPRDDSFRTTK 98
            |:....|..|::|.:|  ..::|...:||::|:.::.:...|||      .|:.|...|||..|.
  Rat    16 VVGANFPNNIQIGGLF--PNQQSQEHAAFRFALSQLTEPPKLLP------QIDIVNISDSFEMTY 72

  Fly    99 KVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSKEFSINLYPSHTLLTLAY 163
            :.|||...||.||||..:....:.:.|.|.|..:..|.....:: .|.:|.:.|.|.   |..|.
  Rat    73 RFCSQFSKGVYAIFGFYERRTVNMLTSFCGALHVCFITPSFPVD-TSNQFVLQLRPE---LQEAL 133

  Fly   164 RDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAE-------MYIRQASPDSYRQVLRAIRQKEI 221
            ..|:.:..|.....||:.|.|| :::....:|.||       :.|...:.:.||.:.:.:.:|:.
  Rat   134 ISIIDHYKWQTFVYIYDADRGL-SVLQRVLDTAAEKNWQVTAVNILTTTEEGYRMLFQDLEKKKE 197

  Fly   222 YKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSVNITAFRLV---DVD 283
            ..::||.....:.:....|::|:.|...|||:.........||..|:.:..|:|.|:||   |..
  Rat   198 RLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTI 262

  Fly   284 SKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSCT 348
            ..|.::.........|..:|....    :..|||.:|.|...|.....|   ..|...|......
  Rat   263 PARIMQQWRTSDSRDHTRVDWKRP----KYTSALTYDGVKVMAEAFQSL---RRQRIDISRRGNA 320

  Fly   349 SD------QTWNDGISLYNQINAAITDGLTGTVQFVE-GRRNIFKLDILKLKQEKIQKVGYWHPD 406
            .|      ..|..||.:...:.....:||||.|||.| |||..:.|.::::|.:.|:|:|||:.|
  Rat   321 GDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 385

  Fly   407 DGV--NISDPTAFYD-SNIANITLVVMTREERPYVMVKEDKN-LTGNLRFEGFCIDLLKAIATQV 467
            |..  ..:|..|..| |::.|.|.:|.|..|.||||:|::.| ..||.|:||:|::|...||..|
  Rat   386 DKFVPAATDAQAGGDNSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYEGYCVELAAEIAKHV 450

  Fly   468 GFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIG 532
            |:.|::|:|.|..||...|:|.:|||:|.||:..|||:|||.:||...||.||||:||||:|||.
  Rat   451 GYSYRLEIVSDGKYGARDPDTKAWNGMVGELVYGRADVAVAPLTITLVREEVIDFSKPFMSLGIS 515

  Fly   533 ILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKE-----T 592
            |:.|.|......:|||::|||.|||:.::.|||.||..||:::|||||||.:..  ::|     |
  Rat   516 IMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHSEE--FEEGRDQTT 578

  Fly   593 DIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERM 657
            ....|:|.|.||.||..|.|::||..::|::.|.|||||.|:||.||||||||||||||||||||
  Rat   579 SDQSNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERM 643

  Fly   658 ISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRV- 721
            :||||||.|||:||||:|||||.|||..|||.|||.:::|||.||::.:.:|||:|.|:|:.||
  Rat   644 VSPIESAEDLAKQTEIAYGTLEAGSTKEFFRRSKIAVFEKMWTYMKSAEPSVFVRTTEEGMIRVR 708

  Fly   722 -MEGSYAFLMESTMLDYAVQR-DCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGII 784
             .:|.||:|:||||.:|..|| .|:..::||.||||||||||||||..|:.::||:|:|.|:|::
  Rat   709 KSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGLL 773

  Fly   785 QILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSR 845
            ..|.:|||.:.|: |.......:.|.:||.:.|:.|||.:|:.||.||::||:.|||:.||
  Rat   774 DKLKNKWWYDKGE-CGSGGGDSKDKTSALSLSNVAGVFYILIGGLGLAMLVALIEFCYKSR 833

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.