DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and gria1b

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_991293.1 Gene:gria1b / 403044 ZFINID:ZDB-GENE-020125-2 Length:917 Species:Danio rerio


Alignment Length:923 Identity:337/923 - (36%)
Similarity:493/923 - (53%) Gaps:85/923 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 SYIILSI----LVISNALPPVIRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYDIE 86
            |:::|..    |...::.|..|.:|.:|..|..|..:   |::|:.:.|....|:|      .::
Zfish     4 SFVLLLTGLLGLCSCSSFPSNINIGGLFPTDSHEYDV---FRFALSQHNDVPKLVP------QVD 59

  Fly    87 YVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRIDLEYNSKEFSIN 151
            .|....||..|...|||...||.||.|..|....:.:.|.|.|..:..:.....::.|: :|.|.
Zfish    60 MVDTGSSFAMTYAFCSQFSKGVYAIIGLYDRKTMNMLMSFCGALHVCFVTPSFPIDTNN-QFVIQ 123

  Fly   152 LYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAEMYIRQASPD-------SY 209
            |.|.   |..|...::.:..|.|...:|..|.|| .::....:|.||...:..|.:       ::
Zfish   124 LRPE---LQDALIALVEHYKWNKFVYMYSSDSGL-TVLQKILDTAAEKTWQVTSINFDTLTEAAF 184

  Fly   210 RQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSVNI 274
            .:.::.:..|:.:|||:|.....:.|....|...:.|...|||:.........:|.:||....|:
Zfish   185 LKAIQDLDNKKEFKIILDCELERLNSILNLIAAQKKNLKNYHYILANLGFLDLNLTEFRKGGANV 249

  Fly   275 TAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYAFANGLHFLNLDNHQN 339
            |.|:|::..:......|...  |:.:..|..:....::...||.:|.|...|..  |.|| ..|.
Zfish   250 TGFQLMNYTNPTVSRTIQDW--LEFDSKDLKSPKRRLKYTGALTYDGVTVMATA--FQNL-RKQR 309

  Fly   340 FYIKNL----SCTSD--QTWNDGISLYNQINAAITDGLTGTVQFVE-GRRNIFKLDILKLKQEKI 397
            ..|...    .|.::  ..|..||.:...:.....:||||.|||.: |.|..|.:.:::......
Zfish   310 IDISRRGNAGECLANPPAPWGQGIDIQRALQQVQFEGLTGHVQFNDKGHRTNFTVSVMEFGPSGP 374

  Fly   398 QKVGYWHPDDGVNISDPTAFYDS------NIANITLVVMTREERPYVMVKED-KNLTGNLRFEGF 455
            :|||||:..:.. :|  ||.|.:      .:.|.|.||.|..|.||||:|:: :.|.||.::||:
Zfish   375 KKVGYWNQREKY-VS--TATYSNMLNETFGLQNRTYVVTTILEAPYVMLKKNHEQLVGNDKYEGY 436

  Fly   456 CIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVI 520
            |::|...||..||:.|::|||.|..||....||..|||:|.||:..:||:|||.:||...||.||
Zfish   437 CVELAAEIAKHVGYSYRLELVGDGKYGARDAETMMWNGMVGELVYGKADVAVAPLTITLVREEVI 501

  Fly   521 DFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEW--- 582
            ||:||||:|||.|:.|.||.....:|||::|||.|||:.::.|||.||..||:::|||||||   
Zfish   502 DFSKPFMSLGISIMIKKPTKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHAD 566

  Fly   583 ------------------KNPHPCYKETDIVE---------NQFSISNSFWFITGTFLRQGSGLN 620
                              .|..|...:....|         |:|.|.||.||..|.|::||..::
Zfish   567 DEEETADQQNQNQPPSPEPNQSPNQSQNQREEKQEKQPEHTNEFGIFNSLWFSLGAFMQQGCDIS 631

  Fly   621 PKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMT 685
            |::.|.|||||.|:||.||||||||||||||||||||:||||||.|||:||||:||||:||||..
Zfish   632 PRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDGGSTKE 696

  Fly   686 FFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRV--MEGSYAFLMESTMLDYAVQR-DCNLTQ 747
            |||.|||.:::|||.||::.:..|||||.::|:.||  .:|.||:|:||||.:|..|| .|:..:
Zfish   697 FFRRSKIAVFEKMWSYMKSAEPTVFVKTTDEGVVRVRKSKGKYAYLLESTMNEYIEQRKPCDTMK 761

  Fly   748 IGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANA 812
            :||.|||||||:||||||..|:.::||:|:|.|:|::..|.:|||.:.|: |.......:.|.:|
Zfish   762 VGGNLDSKGYGVATPKGSALRNPVNLAVLKLNEQGLLDKLKNKWWYDKGE-CGSGGGDSKDKTSA 825

  Fly   813 LGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSLCSEMAEELRFAMHCHGSKSR-- 875
            |.:.|:.|||.:|:.||.||::||:.|||:.||.......|.:.:.|.......|...|...|  
Zfish   826 LSLSNVAGVFYILIGGLGLAMLVALVEFCYKSRIESRRMKQIIDAAMLSSTLTRMGSGGENGRVM 890

  Fly   876 -HR-PRKRSCLNC 886
             |. |:....|.|
Zfish   891 AHDFPKGAQTLPC 903

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 92/379 (24%)
ANF_receptor 61..393 CDD:279440 83/345 (24%)
PBP2_iGluR_Kainate 424..793 CDD:270432 205/402 (51%)
Lig_chan 555..829 CDD:278489 149/306 (49%)
gria1bNP_991293.1 PBP1_iGluR_AMPA_GluR1 26..387 CDD:107385 92/380 (24%)
ANF_receptor 41..368 CDD:279440 83/342 (24%)
PBP2_iGluR_AMPA_GluR1 404..812 CDD:270447 207/408 (51%)
Lig_chan 536..842 CDD:278489 149/306 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591503
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.650

Return to query results.
Submit another query.