DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and gria4b

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_997917.2 Gene:gria4b / 336069 ZFINID:ZDB-GENE-030131-8013 Length:904 Species:Danio rerio


Alignment Length:885 Identity:331/885 - (37%)
Similarity:494/885 - (55%) Gaps:60/885 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 KICCSYIILSILVI----SNALPPVIRVGAIF---TEDERESSIESAFKYAIYRINKEKTLLPNT 79
            :|.|:.::|....:    ..|.|..:::|.:|   |:.|     .:||:.||:..|..    ||.
Zfish     2 RISCNQLLLLFSCVWGLTMGAFPSSVQIGGLFIRNTDQE-----YTAFRLAIFLHNTS----PNA 57

  Fly    80 -----QLVYDIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPTDALLASHVQSICEAYDIPHIEGRI 139
                 .||..::.:...:||..|...|||...||.||||..|......:.|.|.|..|..|....
Zfish    58 SEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCGALHISLITPSF 122

  Fly   140 DLEYNSKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAE------ 198
            ..|..| :|.:.|.||   :..|...::.:.:|.:...:|:.|.| ::::.:..|...:      
Zfish   123 PTEGES-QFVLQLRPS---IRGALLSLLDHYDWNRFVFLYDTDRG-YSILQAIMEKAGQNGWQVS 182

  Fly   199 -MYIRQASPDSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETY 262
             :.:...:..||||:|..:.:::....::|.....:.:....|:.:..:...|||:......:..
Zfish   183 AICVENFNDASYRQLLEDLDRRQEKTFVIDLEAERLNNMLEQIVSVGKHVKGYHYIMANLGFKDI 247

  Fly   263 DLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYAFAN 327
            :||.|.:...|:|.|:|||..:...::::.:..||........:..|  :..|||.:|.|...|.
Zfish   248 NLERFMHGGANVTGFQLVDFSNPMVIKLMQRWNKLDQREYPGSDAPP--KYTSALTYDGVMVMAE 310

  Fly   328 GLHFLNLDNHQNFYIKNLSCTSD------QTWNDGISLYNQINAAITDGLTGTVQFVE-GRRNIF 385
            .  |.|| ..|...|.......|      ..||.||.:...:......||||.|||.. |||..:
Zfish   311 A--FRNL-RRQKVDISRRGIAGDCLANPAAPWNQGIDMERTLKQVHLQGLTGNVQFDHYGRRVNY 372

  Fly   386 KLDILKLKQEKIQKVGYWHPDDGVNISDPTAFY---DSNIANITLVVMTREERPYVMVKEDKNL- 446
            .:|:.:||....:::|||:..|.:.::...|..   .|.:.|.|::|.|..|.||||:|::..: 
Zfish   373 TMDVFELKSNGPRRIGYWNDADKLVLTQDHALLPNETSGMENRTVIVTTIMEGPYVMLKKNWEMY 437

  Fly   447 TGNLRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASMT 511
            .||.::||:|:||...||..:||:|||.:|||..||...|||..|||:|.||:..:|::|||.:|
Zfish   438 EGNEQYEGYCVDLASEIAKHIGFKYKISIVPDGKYGARDPETKIWNGMVGELVYGKAEIAVAPLT 502

  Fly   512 INYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMAR 576
            |...||.||||:||||:|||.|:.|.|......:|||::|||.|||:.::.|||.||..||:::|
Zfish   503 ITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSR 567

  Fly   577 FSPYEWKNPHPCYKE------TDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFF 635
            ||||||....|  :|      :|...|:|.|.||.||..|.|::||..::|::.|.|||||.|:|
Zfish   568 FSPYEWHTEEP--EEGTDGLPSDQPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF 630

  Fly   636 FCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWR 700
            |.||||||||||||||||||||:||||||.|||:||:|:||||:.|||..|||.|||.:|:|||.
Zfish   631 FTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTDIAYGTLDSGSTKEFFRRSKIAVYEKMWS 695

  Fly   701 YMENRKTAVFVKTYEDGIKRV--MEGSYAFLMESTMLDYAVQR-DCNLTQIGGLLDSKGYGIATP 762
            ||::.:..||.||..:|:.||  .:|.||||:||||.:|..|| .|:..::||.|||||||:|||
Zfish   696 YMKSAEPTVFTKTTAEGVARVRKSKGKYAFLLESTMNEYTEQRKPCDTMKVGGNLDSKGYGVATP 760

  Fly   763 KGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLC 827
            |||..|..::||:|:|.|:|::..|.:|||.:.|:..:.....|:..:.||.:.|:.|||.:|:.
Zfish   761 KGSQLRSAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGGEKDKSSQALSLSNVAGVFYILVG 825

  Fly   828 GLALAVVVAIFEFCWNSRKNLNTENQSLCSEMAEELRFAM 867
            ||.||::||:.|||:.||........:....|..:.|.::
Zfish   826 GLGLAMLVALIEFCYKSRNEAKRMKLTFTEAMRNKARLSI 865

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 98/387 (25%)
ANF_receptor 61..393 CDD:279440 88/350 (25%)
PBP2_iGluR_Kainate 424..793 CDD:270432 203/378 (54%)
Lig_chan 555..829 CDD:278489 147/282 (52%)
gria4bNP_997917.2 Periplasmic_Binding_Protein_Type_1 28..398 CDD:324556 98/388 (25%)
PBP2_iGluR_AMPA_GluR4 414..793 CDD:270445 204/380 (54%)
Lig_chan 546..827 CDD:306551 147/282 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591793
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.650

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