DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and GluRIIC

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:953 Identity:276/953 - (28%)
Similarity:440/953 - (46%) Gaps:172/953 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 IRVGAIFTEDERESSIESAFKYAIYRINKEKTLLPNTQLVYDI--EYVPRDDSFRTTKKVCSQLE 105
            |.:||.|.:||.|  :|..|...:..||..::  ..|...|.:  ...|.|.|....:..|..::
  Fly    25 INIGAFFYDDELE--LEKEFMTVVNAINGPES--EQTMRFYPLIKRLKPEDGSVTMQEHACDLID 85

  Fly   106 AGVQAIFGPTDALLASHVQSICEAYDIPHIE-----GRIDLEYNSKEFSINLYPSHTLLTLAYRD 165
            .||.|||||:....:..|..:|.:..|||||     ..|..|..:.:.::||||:..:|:.||.|
  Fly    86 NGVAAIFGPSSKAASDIVALVCNSTGIPHIEFDISDEGIQAEKPNHQMTLNLYPAQAILSKAYAD 150

  Fly   166 IMVYLNWTKVAIIYEED--------YGLFNL--MHSSTETKAEMYIRQASPDSYRQVLRAIRQKE 220
            |:....|.|..|:|:.|        ..|..|  :|:......:.:    ..|.:|.:.::||.:.
  Fly   151 IVQNFGWRKFTIVYDADDARAAARLQDLLQLREVHNDVVRVRKFH----KDDDFRVMWKSIRGER 211

  Fly   221 IYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETY---------DLEDFRYNSVNITA 276
              ::::|..|:.:.....|..:..:.. :|:::|.| :||||         |.|.|   :|||||
  Fly   212 --RVVLDCEPNMLVELLNSSTEFGLTG-QYNHIFLT-NLETYTDHLEELAADNETF---AVNITA 269

  Fly   277 FR-LVDVDSKRY---LEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYAFANGLHFLNLDNH 337
            .| ||:.|...|   ...:.|...:.:...|     |.......|:.|::..||....     |.
  Fly   270 ARLLVNPDPPPYSLPYGYVTQRDNIVYESSD-----PPRTLIHDLIHDALQLFAQSWR-----NA 324

  Fly   338 QNFY-----IKNLSC----TSDQTWNDGISLYNQINAAITDGLTGT------VQFVE-GRRNIFK 386
            ..||     :..::|    :..:||..|..|...:..  |.|:..|      :||.| |:|..|.
  Fly   325 SFFYPDRMVVPRITCDFAASGGRTWAMGRYLARLMKG--TSGVNNTNFRTSILQFDEDGQRITFN 387

  Fly   387 LDILKLKQEKIQKVGYWHPDDGVNISDPTAFYDSNIANITLV-------------VMTREERPYV 438
            :::             :.|.||:.|    |.:|.. ..||.:             |.||...||.
  Fly   388 IEV-------------YDPLDGIGI----AIWDPR-GQITQLNVDVKAQKKMIYRVATRIGPPYF 434

  Fly   439 MVKE---DKNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELME 500
            ...|   :.|||||..::|:.:||:.|||..|||:|....|.|..||....||..||||:.|::.
  Fly   435 SYNETARELNLTGNALYQGYAVDLIDAIARHVGFEYVFVPVADQQYGKLDKETKQWNGIIGEIIN 499

  Fly   501 RRADLAVASMTINYARESVIDFTKPFMNLGIGIL-FKVPTSQPTRLFSFMNPLAIEIWLYVLAAY 564
            ..|.:.:..:||..||::.:|||.|||.||:.|| :|.|..:.| |.:::.|...|:|:::|.:.
  Fly   500 NDAHMGICDLTITQARKTAVDFTVPFMQLGVSILAYKSPHVEKT-LDAYLAPFGGEVWIWILISV 563

  Fly   565 ILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIV 629
            .:::|...::||.|..:|:|||||.::.:::|||:.|.|:.|....:.:..|..:.|::...|:.
  Fly   564 FVMTFLKTIVARISKMDWENPHPCNRDPEVLENQWRIHNTGWLTVASIMTAGCDILPRSPQVRMF 628

  Fly   630 GGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGI 694
            ...|:.|.:||.:|||||||||||..:|...|.:..||:.|.::.:||:.||||.....||...:
  Fly   629 EATWWIFAIIIANSYTANLAAFLTSSKMEGSIANLKDLSAQKKVKFGTIYGGSTYNLLADSNETV 693

  Fly   695 YQKMWRYMENRKTAVFVKTYEDGIKRVME--GSYAFLMESTMLDYAVQRDCNLTQIGGLLDSKGY 757
            |:..:..|.|...:.:.|...:|:.||.:  |.|.||||:|.|:|..:::|:|..:|.....|.|
  Fly   694 YRLAFNLMNNDDPSAYTKDNLEGVDRVRKNRGDYMFLMETTTLEYHREQNCDLRSVGEKFGEKHY 758

  Fly   758 GIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANA---LGVENIG 819
            .||.|.|:.:|..:|:|||:|.|:|.:..|..|||||....|     .:|...:|   :..|.:.
  Fly   759 AIAVPFGAEYRSNLSVAILKLSERGELYDLKQKWWKNPNASC-----FEEPDPDATPDMTFEELR 818

  Fly   820 GVFVVLLCGLALAVVVAIFEF---------------------------C-WNSRKNL-------- 848
            |:|..|..|:.:|.::.|.||                           | ||:||.:        
  Fly   819 GIFYTLYAGILIAFLIGITEFLVYVQQVALEERLTFKDAFKKEIRFVLCVWNNRKPIVAGTPISS 883

  Fly   849 --NTENQSLCSEM---------------AEELRFAMHCHGSKS 874
              .|..:||...:               :||:|......||.|
  Fly   884 VRTTPRRSLDKSLDRTPKSSRRVVIGRSSEEMREMAQGSGSSS 926

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 103/411 (25%)
ANF_receptor 61..393 CDD:279440 93/377 (25%)
PBP2_iGluR_Kainate 424..793 CDD:270432 140/387 (36%)
Lig_chan 555..829 CDD:278489 96/278 (35%)
GluRIICNP_608557.4 PBP1_iGluR_Kainate 26..404 CDD:107377 105/421 (25%)
Periplasmic_Binding_Protein_Type_1 <279..363 CDD:299141 16/95 (17%)
PBP2_iGluR_Kainate 423..794 CDD:270432 138/371 (37%)
Lig_chan 554..828 CDD:278489 96/278 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462692
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.950

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