DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and GluRIIC

DIOPT Version :10

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_608557.4 Gene:GluRIIC / 33275 FlyBaseID:FBgn0046113 Length:940 Species:Drosophila melanogaster


Alignment Length:140 Identity:32/140 - (22%)
Similarity:59/140 - (42%) Gaps:24/140 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 RERSHRKNSSYGAKFEQ-----QQRLQRIIQESND--RNNVIVRQIVQQNQEFRQEK--ENNLKA 71
            ::.|....||.|.:.||     :....::.:||:|  :::...::..:...:...||  ..|.|.
  Fly   417 KKPSEDSKSSEGPEIEQDDVSSENPEDKVAEESDDPKQSSKSAKEPSKSQPKKESEKPDSKNKKP 481

  Fly    72 VEQSKEDEHQRNIDRILKESKEKNKAALLQVSQQIQEENSIRRRKNIEKKAEIEKLKIQSKLDHE 136
            .|.||..|...|....:...|.:::||         ||:...::   ..|:..|..|.|.|...|
  Fly   482 SEDSKSSEDPENQQDDVSSEKPEDEAA---------EESDDPKQ---SPKSAKESSKSQPKKGSE 534

  Fly   137 K---KDREPN 143
            |   |:::|:
  Fly   535 KPDIKNKKPS 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..413 CDD:380605 24/107 (22%)
PBP2_iGluR_Kainate 424..793 CDD:270432
Lig_chan 554..828 CDD:459656
GluRIICNP_608557.4 Periplasmic_Binding_Protein_type1 26..409 CDD:471960
PBP2_iGluR_Kainate 423..794 CDD:270432 31/134 (23%)
Lig_chan 554..827 CDD:459656
Blue background indicates that the domain is not in the aligned region.

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