DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and GluRIIE

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_001036733.1 Gene:GluRIIE / 318623 FlyBaseID:FBgn0051201 Length:897 Species:Drosophila melanogaster


Alignment Length:876 Identity:307/876 - (35%)
Similarity:471/876 - (53%) Gaps:67/876 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 DERESSIESAFKYAIYRINKE-KTLLPNTQLVYDIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPT 115
            |:....:...|.:||...|:| .|.|  |.|..::.|   .|::::..|:|..||.|:..:|||:
  Fly    46 DQNTEQMNIVFDHAIDVANQEVGTSL--TSLKEEVNY---GDAYQSYGKLCRMLETGIAGVFGPS 105

  Fly   116 DALLASHVQSICEAYDIPHIEGRIDLEYNSKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYE 180
            ....|.|:.|||:|.|||||...  :..|::.|  ||:|....|..|...::...|||:...:||
  Fly   106 SRHTAVHLMSICDAMDIPHIYSY--MSENAEGF--NLHPHPADLAKALYSLITEFNWTRFIFLYE 166

  Fly   181 --EDYGLFN-----LMHSSTETKAEMYIRQASPDSYRQVLRAIRQKEIYKIIVDTNPSHIKSFFR 238
              |...:.|     |..|.|......|..|.: .:|:||||.:|:....:|:|..:...:..|..
  Fly   167 SAEYLNILNELTTMLGKSGTVITVLRYDMQLN-GNYKQVLRRVRKSVDNRIVVVGSSETMPEFLN 230

  Fly   239 SILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLD 303
            ...|:.:.:..|.|:....|..::|||:::|:..|||..||...:.....|::.::      |..
  Fly   231 QAQQVGIINEDYKYIIGNLDFHSFDLEEYKYSEANITGLRLFSPEKMAVKELLMKL------GYP 289

  Fly   304 T-----INGSPYIQTESALMFDSVYAFANGLHFLNLDNHQNFYIK----NLSCTSDQTWNDGISL 359
            |     .|||..|..|.||.:|:|..||..|        :|...|    |.|..::...:||.|.
  Fly   290 TDQDEFRNGSCPITVEMALTYDAVQLFAQTL--------KNLPFKPMPQNCSQRTESVRDDGSSF 346

  Fly   360 YNQINA-AITDG-LTGTVQFVEGRRNIFKLDILKLKQEKIQKVGYWHPDDGV---NISDPTAFYD 419
            .|.:.. .:||. |||.:.|....|..:.||:::|:...|.|||.|..|...   .::..||.:|
  Fly   347 KNYMRTLRLTDRLLTGPIYFEGNVRKGYHLDVIELQPSGIVKVGTWDEDRQYRPQRLAPTTAQFD 411

  Fly   420 S---NIANIT-LVVMTREERPYV-MVKEDKNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDN 479
            |   ::||.| :::::...:||. :|:..|.|.||.::||:.:||:|.:|.::||.:.. :...|
  Fly   412 SVDNSLANKTFIILLSVPNKPYAQLVETYKQLEGNSQYEGYGVDLIKELADKLGFNFTF-VNGGN 475

  Fly   480 MYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTR 544
            .||.|...||...|:::|:|..|||||:..:||...||..:|||.|||||||.||:..|......
  Fly   476 DYGSYNKSTNESTGMLREIMTGRADLAITDLTITSEREQALDFTIPFMNLGIAILYLKPQKATPE 540

  Fly   545 LFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFWFIT 609
            ||:||:|.:.|:|.::..:::.||.:.|::.|.||.||.||:||.:|.:.:||||::.||.||.|
  Fly   541 LFTFMDPFSEEVWWFLGFSFLGVSLSFFILGRLSPSEWDNPYPCIEEPEELENQFTLGNSIWFTT 605

  Fly   610 GTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTE-I 673
            |..|:|||.:.|||.|||.|...|:||.||::||||||||||||:|:..|.|.|..|||:..: :
  Fly   606 GALLQQGSEIGPKALSTRTVASFWWFFTLIVVSSYTANLAAFLTIEKPQSLINSVDDLADNKDGV 670

  Fly   674 SYGTLEGGSTMTFFRDSKIGIYQKMWRYM-ENRKTAVFVKTYEDGIKRVMEGS-YAFLMESTMLD 736
            .||..:.|||..||..|....|:||.::| ||.:  ...:...:|:.||...: ||||||||.::
  Fly   671 VYGAKKTGSTRNFFMTSAEERYKKMNKFMSENPQ--YLTEDNMEGVNRVKTNTHYAFLMESTSIE 733

  Fly   737 YAVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTG-DVCN 800
            |..:|:|||.:||..||.||||||..|..|.|.|.:.|:|||||:|:::.:.:|||...| .:|.
  Fly   734 YNTKRECNLKKIGDALDEKGYGIAMRKDWPHRGKFNNALLELQEQGVLEKMKNKWWNEVGTGICA 798

  Fly   801 RDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSLCSEMAEELRF 865
            ..:.:.:  |..|.:.|:.|||.|||.|...|::..|..:.....|..:.....|...:.||.:|
  Fly   799 TKEDAPD--ATPLDMNNLEGVFFVLLVGSCCALLYGIISWVLFVMKKAHHYRVPLRDALKEEFQF 861

  Fly   866 AMHCH-------GSKSRHRPRKRSCLNCSSV 889
            .:..:       .|.|.:...::|.::.:||
  Fly   862 VIDFNNYVRVLKNSASIYSRSRQSSMSVASV 892

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 111/379 (29%)
ANF_receptor 61..393 CDD:279440 103/350 (29%)
PBP2_iGluR_Kainate 424..793 CDD:270432 166/373 (45%)
Lig_chan 555..829 CDD:278489 125/277 (45%)
GluRIIENP_001036733.1 PBP1_iGluR_Kainate 42..396 CDD:107377 110/373 (29%)
ANF_receptor 51..382 CDD:279440 103/354 (29%)
PBP2_iGluR_Kainate 419..790 CDD:270432 166/373 (45%)
Lig_chan 551..824 CDD:278489 125/276 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45462877
Domainoid 1 1.000 82 0.746 Domainoid score I2907
eggNOG 1 0.900 - - E1_KOG1052
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - mtm1027
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - P PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
98.750

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