DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and Grik5

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_006228444.1 Gene:Grik5 / 24407 RGDID:2735 Length:980 Species:Rattus norvegicus


Alignment Length:913 Identity:372/913 - (40%)
Similarity:535/913 - (58%) Gaps:60/913 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ILSILVISNALPPV-----IRVGAIFTED------ERESSIESAFKYAIYRINKEKTLLPNTQLV 82
            :|.:|:::.|.|..     :|:.||..:.      ||     .|...|..:||....:....::.
  Rat     5 LLLLLIVAFANPSCQVLSSLRMAAILDDQTVCGRGER-----LALALAREQINGIIEVPAKARVE 64

  Fly    83 YDIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPTDA-LLASHVQSICEAYDIPHI----EGRIDLE 142
            .||..:.||..:.||..:|..|..||.::.||:.: ..||.|..||...:||||    |....|:
  Rat    65 VDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQ 129

  Fly   143 YNSKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLF---NLMHSSTETKAEMYIRQA 204
            | .:..|::||||:..::||...|:...|:...::|..:...|.   .|:.....:|..:.:|..
  Rat   130 Y-LRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRML 193

  Fly   205 SPDSYRQ---VLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLED 266
              |..|.   :|:.||..::..||:|.|.|......|...:|.|....|.|:.||.|.....|:.
  Rat   194 --DDSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDG 256

  Fly   267 FRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPY--IQTESALMFDSVYAFANGL 329
            ...:|.||..|.:.:.....|.|.:   :.|..:..:....|.|  ....:|||||:|:...:.:
  Rat   257 IVEDSSNILGFSMFNTSHPFYPEFV---RSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAV 318

  Fly   330 HFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQF-VEGRRNIFKLDILKLK 393
            ..||  ..|...:|.|:|||...|..|.||.|.:.....|||||.|:| .:|:|..:.|.||:..
  Rat   319 RELN--RSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKS 381

  Fly   394 QEKIQKVGYWHPDDGVNISDPTAFYDSN----IANITLVVMTREERPYVMVKED-KNLTGNLRFE 453
            ::..:::|.|:.:..:.::..|  .|.|    :||.||||.|..|.||||.:.: :.|:||.|||
  Rat   382 RQGHREIGVWYSNRTLAMNATT--LDINLSQTLANKTLVVTTILENPYVMRRPNFQALSGNERFE 444

  Fly   454 GFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETN-SWNGIVQELMER-RADLAVASMTINYAR 516
            |||:|:|:.:|..:.|:|::.||.|.:||.  ||.| ||.|:|.||:.| :||||||:.||...|
  Rat   445 GFCVDMLRELAELLRFRYRLRLVEDGLYGA--PEPNGSWTGMVGELINRQKADLAVAAFTITAER 507

  Fly   517 ESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYE 581
            |.||||:||||.|||.||::|...:....|||::|.:..:||::|.||:.||..||:.||.||||
  Rat   508 EKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYE 572

  Fly   582 WKNPHPCYK-ETDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYT 645
            |.|||||.: ...|:|||:::.||.||..|.|::|||.:.|:|.|||.|.|.|:.|.||||||||
  Rat   573 WYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLIIISSYT 637

  Fly   646 ANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVF 710
            |||||||||:||..|:|||.|||:||.|.|||:..|||||||::|:...||:||.||::::.:||
  Rat   638 ANLAAFLTVQRMEVPVESADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMWNYMQSKQPSVF 702

  Fly   711 VKTYEDGIKRVMEGSYAFLMESTMLDYAVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAI 775
            ||:.|:||.||:...||||:||||.:|..:.:|||||||||||:|||||..|.|||:||:|:|||
  Rat   703 VKSTEEGIARVLNSRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAI 767

  Fly   776 LELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEF 840
            |:|||...::||..|||:.     .|..|.::.:|..||:|||||:||||:|||.:||.||:.||
  Rat   768 LQLQENNRLEILKRKWWEG-----GRCPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEF 827

  Fly   841 CWNSRKNLNTENQSLCSEMAEELRFAMHCH-GSKSRHRPR----KRSCLNCSSVPTYVPSNVSTS 900
            .|::|::..:|..|:|.||.:|||.|:.|. .|:||.|.|    .|:.|:..:|.....||....
  Rat   828 IWSTRRSAESEEVSVCQEMLQELRHAVSCRKTSRSRRRRRPGGPSRALLSLRAVREMRLSNGKLY 892

  Fly   901 NVG 903
            :.|
  Rat   893 SAG 895

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 108/385 (28%)
ANF_receptor 61..393 CDD:279440 101/345 (29%)
PBP2_iGluR_Kainate 424..793 CDD:270432 209/372 (56%)
Lig_chan 555..829 CDD:278489 157/274 (57%)
Grik5XP_006228444.1 PBP1_iGluR_Kainate_KA1_2 23..401 CDD:380616 108/390 (28%)
Periplasmic_Binding_Protein_Type_2 414..785 CDD:389745 209/372 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350213
Domainoid 1 1.000 362 1.000 Domainoid score I917
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100167
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.760

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