DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and Grin3a

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_001263284.1 Gene:Grin3a / 242443 MGIID:1933206 Length:1135 Species:Mus musculus


Alignment Length:947 Identity:213/947 - (22%)
Similarity:377/947 - (39%) Gaps:198/947 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 KTLLPNTQLVYDIEYVPRDDS---FRTTKKVCSQLEAGV--------QAIFGPTDALLASHVQSI 126
            :||.|...|::.:|.:.|.:.   :..:.:|...:|||:        .:...|..:...|.:||:
Mouse   120 ETLWPRDALLFAVENLNRVEGLLPYNLSLEVVMAIEAGLGDLPLMPFSSPSSPWSSDPFSFLQSV 184

  Fly   127 CEAYDI---------PHIEGR-IDLEYNSKEFSINLY-------------PSHTLLTL-----AY 163
            |....:         |..:|. ::|:..|....|.:.             |.|..|:|     :.
Mouse   185 CHTVVVQGVSALLAFPQSQGEMMELDLVSSVLHIPVLSIVRHEFPRESQNPLHLQLSLENSLSSD 249

  Fly   164 RDIMVYL----NWTKVAIIY-EEDYGL--FNLMHSSTETKAEMYIR---------QASPD--SYR 210
            .|:.|.:    ||...:::. :||:.:  |.|:   ||..::.::.         .::.|  |:.
Mouse   250 ADVTVSILTMNNWYNFSLLLCQEDWNITDFLLL---TENNSKFHLESIINITANLSSTKDLLSFL 311

  Fly   211 QV-LRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSVNI 274
            || |..||......::...:...|:..|....|..::....|::..    ::.::|:.|...:.:
Mouse   312 QVQLENIRNSTPTMVMFGCDMGSIRQIFEMSTQFGLSPPDLHWVLG----DSQNVEELRTEGLPL 372

  Fly   275 TAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYIQTESALMFDSVYAFANGLHFLNLDNHQN 339
            ............:...:....:|....:.|   :..||.|.||:                     
Mouse   373 GLIAHGKTTQSVFEYYVQDAMELVARAVAT---ATMIQPELALL--------------------- 413

  Fly   340 FYIKNLSCTSDQTWN--DGISLYNQINAAITDGLTGTVQ-----FVEGRRNIFKLDILKLKQEKI 397
              ...::|...:|.|  .|..|...:......||:|:::     .|....|.|   |..|:.:.:
Mouse   414 --PSTMNCMDVKTTNLTSGQYLSRFLANTTFRGLSGSIKVKGSTIVSSENNFF---IWNLQYDPM 473

  Fly   398 QK-----VGYWH-----PDDGV----NISDPTAFYDSNIANITLVVMTREERPYVMVKE------ 442
            .|     :|.|.     .|.|:    .....|.|:..|  .:.|.|:|..|.|:|..:|      
Mouse   474 GKPMWTRLGSWQGGRIVMDSGIWP
EQAQRHKTHFHHPN--KLHLRVVTLIEHPFVFTREVDDEGL 536

  Fly   443 --------------------------DKNLTGNLRFE----GFCIDLLKAIATQVGFQYKIELVP 477
                                      ..|.|..::|:    |:|||||:.:|..:.|.:.:.:|.
Mouse   537 CPAGQLCLDPMTNDSSILDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMNFDFDLYIVG 601

  Fly   478 DNMYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKV-PTSQ 541
            |..||.:  :...|.|:|.:|:...|::||.|.:||.||..|||||.||.:..:|||.:. .|:.
Mouse   602 DGKYGAW--KNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAA 664

  Fly   542 PTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKETDIVENQFSISNSFW 606
            |  :.:||.||...:||.:..|..:.:..|.:      ||||:|.....:.......||.|::..
Mouse   665 P--IGAFMWPLHWTMWLGIFVALHITAIFLTL------YEWKSPFGMTPKGRNRNKVFSFSSALN 721

  Fly   607 FITGTFLRQGSGLN-PKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASD--LA 668
            ........:.:.:. ||..:.|.:...|..||:..:|:|||||||.:..|::...:....|  |.
Mouse   722 VCYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLH 786

  Fly   669 EQTE-ISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDGI---KRVMEGSYAFL 729
            ..:: ..:||:...|...:.|.|...:::.|.||.        |....||:   |...|...||:
Mouse   787 HPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN--------VPATPDGVQYLKNDPEKLDAFI 843

  Fly   730 MESTMLDY--AVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILELQEKGIIQILYDKWW 792
            |:..:|||  ::..||.|..:|.....:||||..|..||....||..|.:.:..|.:.:|:|||:
Mouse   844 MDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWY 908

  Fly   793 KNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCWNSRKNLNTENQSLCS 857
            |..  .|.:...: .::...:|:::..|:||:|..|..|:::..|.|         :...:.|..
Mouse   909 KVV--PCGKRSFA-VTETLQMGIKHFSGLFVLLCIGFGLSILTTIGE---------HIVYRLLLP 961

  Fly   858 EMAEELRFAMHCHGSKSRHRPRKRSCLNCSSVPTYVP 894
            .:..:.:.....|.|:..||     .||.|.|....|
Mouse   962 RIKNKSKLQYWLHTSQRFHR-----ALNTSFVEEKQP 993

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 72/415 (17%)
ANF_receptor 61..393 CDD:279440 66/384 (17%)
PBP2_iGluR_Kainate 424..793 CDD:270432 117/414 (28%)
Lig_chan 555..829 CDD:278489 74/282 (26%)
Grin3aNP_001263284.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 72/412 (17%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 116/413 (28%)
Lig_chan 676..942 CDD:278489 74/282 (26%)
PPP2CB binding site. /evidence=ECO:0000250|UniProtKB:Q9R1M7 951..987 8/49 (16%)
GIT1-binding. /evidence=ECO:0000250|UniProtKB:Q9R1M7 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846526
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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