DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and Grin3a

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_612555.1 Gene:Grin3a / 191573 RGDID:621704 Length:1135 Species:Rattus norvegicus


Alignment Length:962 Identity:217/962 - (22%)
Similarity:373/962 - (38%) Gaps:228/962 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 KTLLPNTQLVYDIEYVPRDDS---FRTTKKVCSQLEAGV--------QAIFGPTDALLASHVQSI 126
            :||.|...|::.:|.:.|.:.   :..:.:|...:|||:        .:...|..:...|.:||:
  Rat   120 ETLWPRDALLFAVENLNRVEGLLPYNLSLEVVMAIEAGLGDLPLMPFSSPSSPWSSDPFSFLQSV 184

  Fly   127 CEAYDI---------PHIEGR-IDLEYNSKEFSINLY-------------PSHTLLTL-----AY 163
            |....:         |..:|. ::|:..|....|.:.             |.|..|:|     :.
  Rat   185 CHTVVVQGVSALLAFPQSQGEMMELDLVSSVLHIPVLSIVRHEFPRESQNPLHLQLSLENSLSSD 249

  Fly   164 RDIMVYL----NWTKVAIIY-EEDYGL--FNLMHSSTETKAEMYIRQASPDSYRQVLRAIRQKEI 221
            .|:.|.:    ||...:::. :||:.:  |.|:   ||..::.::...                 
  Rat   250 ADVTVSILTMNNWYNFSLLLCQEDWNITDFLLL---TENNSKFHLESV----------------- 294

  Fly   222 YKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDLEDFRYNSVNITAFRLVDVDSKR 286
              |.:..|.|..|... |.||:||::.|  ....|..:...|::..|......|.|.|...:...
  Rat   295 --INITANLSSTKDLL-SFLQVQMDNIR--NSTPTMVMFGCDMDSIRQIFEMSTQFGLSPPELHW 354

  Fly   287 YLEVINQMQKLQHNGLD---------------------------TINGSPYIQTESALMFDSVYA 324
            .|.....:::|:..||.                           .:..:..||.|.||:      
  Rat   355 VLGDSQNVEELRTEGLPLGLIAHGKTTQSVFEYYVQDAMELVARAVATATMIQPELALL------ 413

  Fly   325 FANGLHFLNLDNHQNFYIKNLSCTSDQTWN--DGISLYNQINAAITDGLTGTVQ-----FVEGRR 382
                             ...::|...:|.|  .|..|...:......||:|:::     .:....
  Rat   414 -----------------PSTMNCMDVKTTNLTSGQYLSRFLANTTFRGLSGSIKVKGSTIISSEN 461

  Fly   383 NIFKLDILKLKQEKIQK-----VGYWH-----PDDGV----NISDPTAFYDSNIANITLVVMTRE 433
            |.|   |..|:.:.:.|     :|.|.     .|.|:    .....|.|...|  .:.|.|:|..
  Rat   462 NFF---IWNLQHDPMGKPMWTRLGSWQGGRIVMDSGIWP
EQAQRHKTHFQHPN--KLHLRVVTLI 521

  Fly   434 ERPYVMVKE--------------------------------DKNLTGNLRFE----GFCIDLLKA 462
            |.|:|..:|                                ..|.|..::|:    |:|||||:.
  Rat   522 EHPFVFTREVDDEGLCPAGQLCLDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQ 586

  Fly   463 IATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFM 527
            :|..:.|.:.:.:|.|..||.:  :...|.|:|.:|:...|::||.|.:||.||..|||||.||.
  Rat   587 LAEDMNFDFDLYIVGDGKYGAW--KNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFF 649

  Fly   528 NLGIGILFKV-PTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEWKNPHPCYKE 591
            :..:|||.:. .|:.|  :.:||.||...:||.:..|..:.:..|.:      ||||:|.....:
  Rat   650 STSLGILVRTRDTAAP--IGAFMWPLHWTMWLGIFVALHITAIFLTL------YEWKSPFGMTPK 706

  Fly   592 TDIVENQFSISNSFWFITGTFLRQGSGLN-PKATSTRIVGGCWFFFCLIIISSYTANLAAFLTVE 655
            .......||.|::..........:.:.:. ||..:.|.:...|..||:..:|:|||||||.:..|
  Rat   707 GRNRNKVFSFSSALNVCYALLFGRTAAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGE 771

  Fly   656 RMISPIESASD--LAEQTE-ISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKTYEDG 717
            ::...:....|  |...:: ..:||:...|...:.|.|...:::.|.||.        |....||
  Rat   772 KIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRRYN--------VPATPDG 828

  Fly   718 I---KRVMEGSYAFLMESTMLDY--AVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAILE 777
            :   |...|...||:|:..:|||  ::..||.|..:|.....:||||..|..||....||..|.:
  Rat   829 VQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQ 893

  Fly   778 LQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFCW 842
            .:..|.:.:|:|||:|..  .|.:...: .::...:|:::..|:||:|..|..|:::..|.|   
  Rat   894 YKSHGFMDVLHDKWYKVV--PCGKRSFA-VTETLQMGIKHFSGLFVLLCIGFGLSILTTIGE--- 952

  Fly   843 NSRKNLNTENQSLCSEMAEELRFAMHCHGSKSRHRPRKRSCLNCSSVPTYVP 894
                  :..::.|...:..:.:.....|.|:..||     .||.|.|....|
  Rat   953 ------HIVHRLLLPRIKNKSKLQYWLHTSQRFHR-----ALNTSFVEEKQP 993

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 76/430 (18%)
ANF_receptor 61..393 CDD:279440 70/399 (18%)
PBP2_iGluR_Kainate 424..793 CDD:270432 117/414 (28%)
Lig_chan 555..829 CDD:278489 74/282 (26%)
Grin3aNP_612555.1 PBP1_iGluR_NMDA_NR3 30..497 CDD:107372 76/427 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 60..117
ANF_receptor 127..469 CDD:279440 67/392 (17%)
PBP2_iGluR_NMDA_Nr3 512..908 CDD:270438 116/413 (28%)
Lig_chan 676..942 CDD:278489 74/282 (26%)
PPP2CB binding site 951..987 8/49 (16%)
GIT1-binding. /evidence=ECO:0000269|PubMed:24297929 1082..1115
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350032
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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