DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and glr-9

DIOPT Version :10

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_502564.2 Gene:glr-9 / 189098 WormBaseID:WBGene00012190 Length:487 Species:Caenorhabditis elegans


Alignment Length:463 Identity:89/463 - (19%)
Similarity:168/463 - (36%) Gaps:135/463 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   452 FEGFCIDLLKAIATQVGFQYKIELVPDNMYGV---YIPETNSWNGIVQELMERRADLAVASMTIN 513
            |.|:.:::||.|...:.::....:.|..:.|:   .:.:..:|:|::..|....|| |||.|   
 Worm    36 FPGWTMEVLKMITDSLKWEIIPVVTPTIVGGLDWGTLQKNGTWSGVLGYLQNGTAD-AVALM--- 96

  Fly   514 Y----ARESVIDFTKPFMNL-GIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYIL------- 566
            |    .|....:::.|..|: .:.:..|...:..:.|::...|.::|:||.:||:.:|       
 Worm    97 YQKTDTRNEYFEYSYPVTNVQPVFVARKKTETLGSVLWNAFKPFSVEVWLCLLASLVLNLLIMIA 161

  Fly   567 ---VSFALFVMARFSPYE--WKNPHPCYKETDIVENQFSISNSFWFITGTFLRQGSGLNPKATST 626
               :.|.|...:||.|:|  |   |....:.|    :.|....|:.::|..:             
 Worm   162 ISGIEFKLLFRSRFRPWEMLW---HVVQLQLD----EKSDDMLFYTLSGNIV------------- 206

  Fly   627 RIVGGCWFFFCL----IIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFF 687
                  .|.|.|    |:|..|...|...|......:|..:|.::                :...
 Worm   207 ------LFVFALLQSGILIEVYKGMLLTALITSNGDNPFANADEM----------------IKLI 249

  Fly   688 RDSKIGIYQKMWRYMENRKTAVFVKTYEDGIKRVMEGSYAFLMEST----------------MLD 736
            .:.|   |.....||.|        .|.|.::...:..:..|..:|                ::|
 Worm   250 GEKK---YHLTTNYMGN--------WYFDDLQHSDQQHFVSLRAATASNPVIPAASVSAALDLVD 303

  Fly   737 -----YAVQRD----------CNLTQIG-GLLDSKGYGIATPKGSPWRDKISLAILE-----LQE 780
                 |.:|:|          ||...:. |:.....:.:.|...|        .|.|     :..
 Worm   304 SGKYIYPIQQDSLAMQMSKERCNYVYVSDGMPQVSSFFVFTKNFS--------GIAEFNTQIIMN 360

  Fly   781 KGIIQILYDKWWKNTG------DVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFE 839
            :..||..::|:: |.|      ..|...:.:.......|.:|::.|||.:...|:|.:::|.:||
 Worm   361 QAFIQRTFNKYF-NEGFKLGFIPKCEVTEPTASDATKPLDIESVIGVFTIGALGVAASLMVFVFE 424

  Fly   840 F--CWNSR 845
            .  .|:.|
 Worm   425 IYHYWHVR 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..413 CDD:380605
PBP2_iGluR_Kainate 424..793 CDD:270432 74/401 (18%)
Lig_chan 554..828 CDD:459656 59/332 (18%)
glr-9NP_502564.2 HisJ 38..>132 CDD:440596 20/97 (21%)
Blue background indicates that the domain is not in the aligned region.

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