DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and glr-3

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:NP_492017.3 Gene:glr-3 / 172449 WormBaseID:WBGene00001614 Length:836 Species:Caenorhabditis elegans


Alignment Length:812 Identity:289/812 - (35%)
Similarity:435/812 - (53%) Gaps:78/812 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 YDIEYVP---------RDDSFRTTK--------KVCSQLEAGVQAIFGPT--DALLASH--VQSI 126
            :.::.:|         :.:||:...        .||:.|..|..||..|.  |..||:.  ||||
 Worm    41 FRVQVIPYETKPLWRIKQESFKIVGISIENGLFSVCNCLILGASAIILPEQYDGHLAAAAIVQSI 105

  Fly   127 CEAYDIPHIEGRIDLEYNSKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLM-- 189
            .:..::|.:.  :.|...::. |.:|:|.....:||....:....|..|.:::||...|..:.  
 Worm   106 ADNTNVPCVS--LHLSPPTRP-STHLHPHLNAKSLAVAAFIKREKWKDVVVVFEEPDELLEITDM 167

  Fly   190 ----HSSTETKAEMYIRQASPDSYRQVLRAIRQK-EIYKIIVDTNPSHIKSFFRSILQLQMNDHR 249
                |...::.:...:|....|.|...|:.|:.| :.|:|:::........|......:.|....
 Worm   168 ITAGHFDPDSFSSQLVRLKHGDDYGNELKHIKNKLDRYRIVINIPLQKALHFLEQAANMSMCGVL 232

  Fly   250 YHYMFTTFDLETYDLEDFR-YNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTI--NGSPYI 311
            |||:....||.|.|::..| ....|||:|.:.||:|: |:|.|.  |::.|.....:  .|.|| 
 Worm   233 YHYVVMDMDLVTVDIDSIRGIEDCNITSFGVHDVNSE-YIEDIR--QEIVHKSSIRLPKKGVPY- 293

  Fly   312 QTESALMFDSVYAFANGLHFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQ 376
              .:::..|::......:..:.:.:...       |.|  :|..|..:..:.......|::|.:.
 Worm   294 --TTSIWIDTLRLLIRSMKSIQIWDEPR-------CGS--SWKSGSDIKKRFFENPLAGISGDLH 347

  Fly   377 FV-EGRRNIFKLDILKLKQEKIQKVGYWHPDDGVNISDPTAFYDSNIANIT-----LVVMTREER 435
            :. .|.|:.:.|.:.: :....||...|........|.......::...:|     |.:....|.
 Worm   348 WAPSGERSNYTLHVYR-RTLSFQKFAEWSSRTRRIASSE
AVVIANSSEKLTLEGKHLKISVYLEA 411

  Fly   436 PYVMVKEDKNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETN-SWNGIVQELM 499
            |:||:      |.|..:||:|||||..||..:.|.|.|:.|.||.||  ..|:| .|:|:|.||.
 Worm   412 PFVMI------TSNGSYEGYCIDLLHKIANILKFTYTIQKVRDNAYG--SKESNGKWSGMVGELQ 468

  Fly   500 ERRADLAVASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAY 564
            ...|||||||:||:|.|..|||||.|:|:|||.||||.|..:.:..|.||:||:.::|:...|:|
 Worm   469 RGDADLAVASLTISYGRSEVIDFTVPYMHLGISILFKKPRIRDSDWFKFMDPLSTQVWIMTFASY 533

  Fly   565 ILVSFALFVMARFSPYEW---KNPHPCYKETDIVENQFSISNSFWFITGTFLRQGSGLNPKATST 626
            .:||.|::::|:.||||.   ...:..||.   |:||||:.|||||...:.::|||.|.|:|.||
 Worm   534 FVVSVAIWIIAKISPYEQFERDEDNGQYKP---VDNQFSLRNSFWFTVCSLMQQGSELCPRAAST 595

  Fly   627 RIVGGCWFFFCLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSK 691
            |::.|.|:||.||:||||||||||.||..||.:|||:|.|||.||:|.||||..||||:||.:||
 Worm   596 RLLTGIWWFFALILISSYTANLAAVLTTRRMETPIENADDLAAQTKIKYGTLGRGSTMSFFNESK 660

  Fly   692 IGIYQKMWRYMENRKTAVFVKTYEDGIKRVMEGSYAFLMESTMLDYAVQRDCNLTQIGGLLDSKG 756
            |..|::||:.|.: ...:||::.::||.||....||:||||:||:|||:|||.|.|||||:|.||
 Worm   661 IETYERMWQLMSS-SPGLFVQSSKEGIARVKSSDYAYLMESSMLEYAVERDCELMQIGGLIDQKG 724

  Fly   757 YGIATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGV 821
            |||..|||||:|:.||.|||.||||..:..|.:||||:...||.:..:..:...     |:|||:
 Worm   725 YGIGLPKGSPYRELISTAILRLQEKTELTELKEKWWKDKSVVCEQPKRKDQDDG-----ESIGGI 784

  Fly   822 FVVLLCGLALAVVVAIFEFCWNSRKNLNTENQ 853
            |::|:.||.|..|:.|||.. .:||....::|
 Worm   785 FIILVVGLVLTAVLVIFELI-TTRKPSPAQSQ 815

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 76/358 (21%)
ANF_receptor 61..393 CDD:279440 73/341 (21%)
PBP2_iGluR_Kainate 424..793 CDD:270432 192/377 (51%)
Lig_chan 555..829 CDD:278489 139/276 (50%)
glr-3NP_492017.3 PBP1_iGluR_non_NMDA-like 21..385 CDD:380591 77/362 (21%)
Periplasmic_Binding_Protein_Type_2 401..761 CDD:419667 191/371 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167321
Domainoid 1 1.000 284 1.000 Domainoid score I858
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 1 1.000 - - otm14234
orthoMCL 1 0.900 - - OOG6_100167
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
98.610

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