DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11155 and Grin3b

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_006513350.1 Gene:Grin3b / 170483 MGIID:2150393 Length:1138 Species:Mus musculus


Alignment Length:536 Identity:147/536 - (27%)
Similarity:239/536 - (44%) Gaps:98/536 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   370 GLTGTVQFVEGRRNI-----FKLDILKLKQEKI-----QKVGYWHPDDG----------VNISDP 414
            |.||.| :|.|...:     ||  :..|:::.:     ..||.|  .||          :.:..|
Mouse   429 GRTGAV-WVAGSSQVHVSRHFK--VWSLRRDPLGAPAWATVGSW--QDGQLDFQPGAAALRVPSP 488

  Fly   415 TAFYDSNIANITLVVMTREERPYVMVKE--------------DKNLTGNLRFE------------ 453
            :    ...|...|.|:|..|.|:|..:|              |.....:.|.:            
Mouse   489 S----GTQARPKLRVVTLVEHPFVFTRESDEDGQCPAGQLCLDPGTNDSARLDALFTALENGSVP 549

  Fly   454 --------GFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASM 510
                    |:|||||:.:|..:.|.:::.:|.|..||..  ....|.|:|.:|:..||.:||.|.
Mouse   550 RTLRRCCYGYCIDLLERLAEDLAFDFELYIVGDGKYGAL--RDGRWTGLVGDLLAGRAHMAVTSF 612

  Fly   511 TINYARESVIDFTKPFMNLGIGILFKV-PTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVM 574
            :||.||..|:|||.||.:..:||:.:. .|:.|  :.:||.||...:|:.|.||..|.  |||: 
Mouse   613 SINSARSQVVDFTSPFFSTSLGIMVRTRDTASP--IGAFMWPLHWSMWVGVFAALHLT--ALFL- 672

  Fly   575 ARFSPYEWKNPH---PCYKETDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFF 636
               :.|||::|:   |..:....|.:..|..|..:.|  .|.|..|...||..:.|.:...|..|
Mouse   673 ---TLYEWRSPYGLTPRGRNRGTVFSYSSALNLCYAI--LFGRTVSSKTPKCPTGRFLMNLWAIF 732

  Fly   637 CLIIISSYTANLAAFLTVERMISPIESASD--LAEQTE-ISYGTLEGGSTMTFFRDSKIGIYQKM 698
            ||:::|||||||||.:..::....:....|  |...:: ..:||:...|...:.:.|    :.:|
Mouse   733 CLLVLSSYTANLAAVMVGDKTFEELSGIHDPKLHHPSQGFRFGTVWESSAEAYIKAS----FPEM 793

  Fly   699 WRYMENRKTAVFVKTYEDGIKRVMEGS---YAFLMESTMLDY--AVQRDCNLTQIGGLLDSKGYG 758
            ..:|....    ..|...|:..:....   .||:|:.::|||  ::..||.|..:|.....:|||
Mouse   794 HAHMRRHS----APTTPHGVAMLTSDPPKLNAFIMDKSLLDYEVSIDADCKLLTVGKPFAIEGYG 854

  Fly   759 IATPKGSPWRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFV 823
            |..|:.||....:|..|...:..|.|.:|:|||:|..  .|.: .....::...:||.::.|:||
Mouse   855 IGLPQNSPLTSNLSEFISRYKSSGFIDLLHDKWYKMV--PCGK-RVFAVTETLQMGVYHLSGLFV 916

  Fly   824 VLLCGLALAVVVAIFE 839
            :|..||..|::.::.|
Mouse   917 LLCLGLGSALLTSLGE 932

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 14/59 (24%)
ANF_receptor 61..393 CDD:279440 8/27 (30%)
PBP2_iGluR_Kainate 424..793 CDD:270432 119/414 (29%)
Lig_chan 555..829 CDD:278489 79/284 (28%)
Grin3bXP_006513350.1 PBP1_iGluR_NMDA_NR3 141..481 CDD:380600 14/56 (25%)
PBP2_iGluR_NMDA_Nr3 494..888 CDD:270438 118/413 (29%)
Lig_chan 656..922 CDD:365843 79/284 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846670
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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