DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and grik5

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_002936446.1 Gene:grik5 / 100497490 XenbaseID:XB-GENE-953974 Length:995 Species:Xenopus tropicalis


Alignment Length:901 Identity:373/901 - (41%)
Similarity:527/901 - (58%) Gaps:63/901 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 LSILVISNALPPV-----IRVGAIFTEDERESSIESAFKYAIYR--INKEKTLLPNTQLVYDIEY 87
            |.:|::|...|.|     :||.||. :|:...........|:.|  ||.......:.::..:|..
 Frog    10 LLLLLLSFTSPGVSLLSSLRVAAIL-DDQTVCGRGERLALALAREHINSHTQGSASGRVEVEIFE 73

  Fly    88 VPRDDSFRTTKKVCSQLEAGVQAIFGP-TDALLASHVQSICEAYDIPHI----EGRIDLEYNSKE 147
            :.:|..:.||..:|..|..||.::.|| |....||.|..||...:||||    |....|:| .:.
 Frog    74 LQKDSQYETTDTMCQILPKGVVSVLGPSTSPASASTVSHICGEKEIPHIKVGPEEAPKLQY-LRF 137

  Fly   148 FSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAEMYIRQ--ASPD--S 208
            .|::||||:..::||...|:...:....::|..:...|..|         |..:||  .|.|  |
 Frog   138 ASVSLYPSNEDISLAVSHILKSFHNPSTSLICAKAECLLRL---------EELVRQFLISKDTLS 193

  Fly   209 YRQ---------VLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLETYDL 264
            .|.         :|:.||..::..||:|.|.:......:...:|.|....|.|:.||.|.....|
 Frog   194 VRMLDESNDPTPLLKEIRDDKVSTIIIDANATVSHLILKKASELGMTSAHYKYILTTMDFPLLSL 258

  Fly   265 EDFRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYI--QTESALMFDSVYAFAN 327
            |....:..||..|.:.:.....|||.   ::.|..:..:....|.|:  ...:|||||:|:...:
 Frog   259 EGIVSDQSNILGFSMYNSSHPFYLEF---LRSLNMSWRENCELSTYLGPALSAALMFDAVHVVVS 320

  Fly   328 GLHFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQF-VEGRRNIFKLDILK 391
            .:..||  ..|...:|.|||::.|.|..|.||.|.:.....|||||.|:| .:|:|..:.|.||:
 Frog   321 AVRELN--RSQEIGVKQLSCSTSQIWQHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILE 383

  Fly   392 LKQEKIQKVGYWHPDD--GVNISDPTAFYDSNIANITLVVMTREERPYVMVKED-KNLTGNLRFE 453
            ...:..:::|.|:.:.  .:|.:.........:.|.||||.|..|.||:|.|.: ::|:||.::|
 Frog   384 KAGDGHREIGVWYSNRTLAMNATSLDLSTSETLENKTLVVTTILENPYMMRKSNYRSLSGNDQYE 448

  Fly   454 GFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETN-SWNGIVQELMERRADLAVASMTINYARE 517
            |||.::|..:|..:.|.|||:||.|.:||.  ||.| ||.|:|.||:.|:||||||:.||...||
 Frog   449 GFCAEMLMELAALLRFNYKIKLVEDGLYGA--PEPNGSWTGMVGELINRKADLAVAAFTITAERE 511

  Fly   518 SVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALFVMARFSPYEW 582
            .||||:||||.|||.||::|...:....|||::|.:..:||::|.||:.||..||:.||.|||||
 Frog   512 KVIDFSKPFMTLGISILYRVQMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCVLFLAARLSPYEW 576

  Fly   583 KNPHPCYKET-DIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFFCLIIISSYTA 646
            .|||||.:|. .|:|||:::.||.||..|.|::|||.:.|:|.|||.|.|.|:.|.|||||||||
 Frog   577 YNPHPCLRERHHILENQYTLGNSLWFPVGGFMQQGSEVMPRALSTRCVSGVWWAFTLIIISSYTA 641

  Fly   647 NLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFV 711
            ||||||||:||..|||||.|||:||.|.|||:.||||||||::|:...||:||.||.:::.:|||
 Frog   642 NLAAFLTVQRMEVPIESADDLADQTNIEYGTIHGGSTMTFFQNSRYQTYQRMWNYMNSKQPSVFV 706

  Fly   712 KTYEDGIKRVMEGSYAFLMESTMLDYAVQRDCNLTQIGGLLDSKGYGIATPKGSPWRDKISLAIL 776
            |:.|:||.||:...||||:||||.:|..:.:|||||||||||:|||||..|.|||:||:|:||||
 Frog   707 KSTEEGIARVLNSRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPYRDEITLAIL 771

  Fly   777 ELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIFEFC 841
            :|||...::||..|||:  |..|   .|.::.:|..||:|||||:||||:|||.:||.|||.||.
 Frog   772 QLQENNRLEILKRKWWE--GGKC---PKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAIMEFV 831

  Fly   842 WNSRKNLNTENQSLCSEMAEELRFAMHC-HGSKSRHRPRK------RSCLNCSSVP 890
            |::|::::.|..|:|.||..|||.|:.| ..|:||||.|.      |:.|:.|..|
 Frog   832 WSTRRSVDNEEISVCQEMLSELRSAVSCKKTSRSRHRRRPPRHLHGRTLLSLSRPP 887

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 108/390 (28%)
ANF_receptor 61..393 CDD:279440 101/354 (29%)
PBP2_iGluR_Kainate 424..793 CDD:270432 211/371 (57%)
Lig_chan 555..829 CDD:278489 161/274 (59%)
grik5XP_002936446.1 PBP1_iGluR_Kainate_KA1_2 27..405 CDD:380616 108/393 (27%)
Periplasmic_Binding_Protein_Type_2 418..788 CDD:389745 211/371 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 361 1.000 Domainoid score I951
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 1 1.010 - - D60688at33208
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.030

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