DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and grik4

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_031761990.1 Gene:grik4 / 100490768 XenbaseID:XB-GENE-1011875 Length:962 Species:Xenopus tropicalis


Alignment Length:895 Identity:354/895 - (39%)
Similarity:519/895 - (57%) Gaps:61/895 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 LKKICCSYIILSILVISNALPPVIRVGAIFTEDERESS--IESAFKYAIYRINKEKTLLPNTQLV 82
            :.::....:::.:.::.:|..|.:|:.||. :|..|.|  ...:...|..|||:........:|.
 Frog     1 MPRVLAPMVLVLLWLMKSAGSPSLRIAAIL-DDPMECSRGERLSITLAKNRINRAPERQGKARLE 64

  Fly    83 YDIEYVPRDDSFRTTKKVCSQLEAGVQAIFGPT-DALLASHVQSICEAYDIPHIEGRID--LEYN 144
            .||..:.:|..:.|.:.:|..|..||..:.||: ....:|.:.:||...::|||:...:  |.:.
 Frog    65 VDIFELLKDSEYETAETMCQILPKGVLGVLGPSYSPSSSSIISNICGEKEVPHIKVSTEEFLRFQ 129

  Fly   145 SKEF-SINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAEMYIRQ--ASP 206
            .:.| ::||:||:|.::.|...::.:.|.|...:|..:...|.||         |..:||  .|.
 Frog   130 YQRFTTLNLHPSNTDISAAVATLLRFFNSTTACLICAKAECLLNL---------EKLLRQFLISK 185

  Fly   207 D--SYRQ---------VLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQMNDHRYHYMFTTFDLE 260
            |  |.|.         :|:.||..:...|||..|.|...:......:|.|....|.|:||..:..
 Frog   186 DCLSVRMLDDTWDPTPLLKEIRDDKTSTIIVHANASMSHTILMKAAELGMVTAYYTYIFTNLEFV 250

  Fly   261 TYDLEDFRYNSVNITAFRLVDVDSKRYLEVINQMQKLQHNGLDTINGSPYI--QTESALMFDSVY 323
            ....|....:.|||..|.:.:.....:.|..:.:|:......|   .||:.  ...:||:||:||
 Frog   251 LQRFESPLDDRVNILGFSMFNQSHSYFKEFAHTLQQSWEENCD---HSPFTGPALSAALLFDAVY 312

  Fly   324 AFANGLHFLNLDNHQNFYIKNLSCTSDQTWNDGISLYNQINAAITDGLTGTVQF-VEGRRNIFKL 387
            ...:.:..||  ..|...:|.|||.|.|.|..|.||.|.:.....:||||.|:| .:|:|:.:.:
 Frog   313 GIVSAVQELN--RSQEIGVKPLSCGSSQIWQHGTSLMNYLRMVELEGLTGHVEFNSKGQRSNYDM 375

  Fly   388 DILKLKQEKIQKVGYWHPDDGVNIS----DPTAFYDSNIANITLVVMT----REERPYVMVKED- 443
            .|::..:...|::|.||..:|:|:.    .|.|  ...:.|.||:|.|    .:|.||:|:|.: 
 Frog   376 KIMQYTKTGFQEIGQWHVTNGLNMDKRYFSPNA--SDTLVNKTLIVTTILFFLQENPYLMLKANH 438

  Fly   444 KNLTGNLRFEGFCIDLLKAIATQVGFQYKIELVPDNMYGVYIPETN-SWNGIVQELMERRADLAV 507
            :.|.||.|:||||:|:||.:|..:.|.|||.||.|.:|||  ||.| :|.|:|.||:.|:|||||
 Frog   439 QELEGNDRYEGFCVDMLKELAAILRFNYKIRLVADGVYGV--PELNGTWTGMVGELISRKADLAV 501

  Fly   508 ASMTINYARESVIDFTKPFMNLGIGILFKVPTSQPTRLFSFMNPLAIEIWLYVLAAYILVSFALF 572
            |.:||...||.||||:||||.|||.||::|...:....|||::|.:..:||::|.||:.||..||
 Frog   502 AGLTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPGVWLFMLLAYLAVSCVLF 566

  Fly   573 VMARFSPYEWKNPHPCYK-ETDIVENQFSISNSFWFITGTFLRQGSGLNPKATSTRIVGGCWFFF 636
            ::||.:||||.:||||.: ..:::.||:|:.||.||..|.|::|||.:.|:|.|||.|.|.|:.|
 Frog   567 LVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAF 631

  Fly   637 CLIIISSYTANLAAFLTVERMISPIESASDLAEQTEISYGTLEGGSTMTFFRDSKIGIYQKMWRY 701
            .|||||||||||||||||:||..||||..|||:||.|.|||:.|||:||||::|:...||:||.|
 Frog   632 TLIIISSYTANLAAFLTVQRMDVPIESVDDLADQTTIEYGTIHGGSSMTFFQNSRYQTYQRMWNY 696

  Fly   702 MENRKTAVFVKTYEDGIKRVMEGSYAFLMESTMLDYAVQRDCNLTQIGGLLDSKGYGIATPKGSP 766
            |.:::.:||||:.|:||.||:..:||||:||||.:|..||:|||||:|||||:|||||..|.||.
 Frog   697 MHSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQRNCNLTQVGGLLDTKGYGIGMPVGSA 761

  Fly   767 WRDKISLAILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLAL 831
            :||:..||||:|||...::.|..|||  .|..|   .|.::.:|..||:|||||:||||:|||.:
 Frog   762 FRDEFDLAILQLQENNCLEDLKRKWW--DGGKC---PKEEDHRAKGLGMENIGGIFVVLICGLIV 821

  Fly   832 AVVVAIFEFCWNSRKNLNTENQSLCSEMAEELRFAMHCHGSKSRHRPRKR 881
            |:::|:.||.|..| |......|:|.|||.||...:.|   |....||:|
 Frog   822 AILIAMLEFLWTVR-NAEDSEVSVCQEMASELSSIILC---KDSFLPRRR 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 106/387 (27%)
ANF_receptor 61..393 CDD:279440 95/351 (27%)
PBP2_iGluR_Kainate 424..793 CDD:270432 205/375 (55%)
Lig_chan 555..829 CDD:278489 153/274 (56%)
grik4XP_031761990.1 Periplasmic_Binding_Protein_type1 23..400 CDD:415822 107/391 (27%)
PBP2_iGluR_kainate_KA1 414..788 CDD:270442 206/377 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60082
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000021
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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