DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11155 and grin2cb

DIOPT Version :9

Sequence 1:NP_651941.2 Gene:CG11155 / 43822 FlyBaseID:FBgn0039927 Length:910 Species:Drosophila melanogaster
Sequence 2:XP_009305071.2 Gene:grin2cb / 100333648 ZFINID:ZDB-GENE-100308-2 Length:1328 Species:Danio rerio


Alignment Length:927 Identity:216/927 - (23%)
Similarity:373/927 - (40%) Gaps:215/927 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PPVIRVGAIFTEDERESSIESAFKYAIYRINKEKTL------LPNTQLVYDIEYVPRDDSFRTTK 98
            ||.:.|..:|:.....|.|:.       |::.|..|      .|.|.||.|..  ||    ....
Zfish    36 PPSVNVAVVFSGSAHHSEIKG-------RLSPENFLDMPLEVNPITVLVNDTN--PR----ALLT 87

  Fly    99 KVCSQLEAGVQAIFGPT--DALLASHVQSICE-----------------AYDIPH-IEGRIDLEY 143
            ::|..:.|  :::.|..  |.:.:..|..|.:                 |..||| .:|...|:.
Zfish    88 RLCQTMAA--ESLHGVVFEDDVDSEAVAQILDFVSSQTSIPIVGISGGSAVVIPHKADGSTFLQM 150

  Fly   144 N-SKEFSINLYPSHTLLTLAYRDIMVYLNWTKVAIIYEEDYGLFNLMHSSTETKAEMYIRQASPD 207
            . |.:..||          |...:|...||....:|        ..::...||..: |||..:..
Zfish   151 GASIDQQIN----------AMFKVMEEYNWGNFVVI--------TSLYPGYETFVD-YIRSFTDT 196

  Fly   208 SYRQVLRAIRQKEIYKIIVDTNPSHIKSFFRSILQLQM----NDHRYHYMFTTFDLETY----DL 264
            ||          .::::             :.:|..:|    ||.|...:....|.:.|    ..
Zfish   197 SY----------FLWEL-------------QDVLSFEMSVGANDIRTRRLLQQVDSQVYLVYCSH 238

  Fly   265 EDFRYNSVNITAFRL---VDVDSKRYLEVINQMQKLQHN---------GLDTINGSPYIQTESAL 317
            |:.:|      .||:   |.:....|:.::..:......         |:.:|....:.:|....
Zfish   239 EEAQY------LFRMASDVGLLGPGYIWIVPSLAVGNPEAAPPASFPVGVISIITDRWRKTLRQR 297

  Fly   318 MFDSVYAFANGLHFLNLDNHQNFYIKNLS-CTSDQTWNDGISLY-NQINAA--------ITDGLT 372
            :.:.|.....|:|  :...|:.|..:..| |:|........||: :.:|.:        .:||..
Zfish   298 VREGVAIIVKGVH--SFHKHRGFIPEGHSDCSSPVKSYANNSLFRHMLNVSWEHKDLSFNSDGYL 360

  Fly   373 GTVQFVEGRRNIFKLDILKLKQEKIQKVGYWHPDDGV-NISDPT-----AFYDSNIANITLVVMT 431
            .....|     |..||    ::....|||.:  :.|: .:..|.     :|.:....|..|.|.|
Zfish   361 TNPSMV-----IIALD----RENHWDKVGSY--EGGILQMRYPVWPRYGSFLEPVSDNRHLTVAT 414

  Fly   432 REERPYVMVKEDKNLTG---------------------------NLRFEGFCIDLLKAIATQVGF 469
            .||||:|:|:.....||                           .|..:|||||:||.::..:.|
Zfish   415 LEERPFVIVESVDPATGTCVRNTVPCRRQSNRTESIIGHTEPYTKLCCKGFCIDILKKLSRTIKF 479

  Fly   470 QYKIELVPDNMYGVYIPETNSWNGIVQELMERRADLAVASMTINYARESVIDFTKPFMNLGIGIL 534
            .|.:.||.:..:|..:  ...|||::.|:..:|||:|:.|:|||..|..::||:.||:..||.::
Zfish   480 SYDLYLVTNGKHGKMV--RGVWNGMIGEVFYKRADMAIGSLTINEERSEIVDFSVPFVETGISVM 542

  Fly   535 F--KVPTSQPTRLFSFMNPLAIEIWLYVLAAYI-LVSFALFVMARFSPYEWKNPHPCYKETDIVE 596
            .  ...|..|:   :|:.|.:..:|:.:....: :|:..:||...|||..:..        .:|.
Zfish   543 VARSNGTVSPS---AFLEPYSPAVWVMMFVMCLTVVAVTVFVFEYFSPVGYNR--------SLVS 596

  Fly   597 NQ------FSISNSFWFITGTFLRQGSGL-NPKATSTRIVGGCWFFFCLIIISSYTANLAAFLTV 654
            .:      |:|..|.|.:.|........: |||.|:::|:...|.||.:|.::|||||||||:..
Zfish   597 AKAPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQ 661

  Fly   655 ERMISPIESASDLAEQ------TEISYGTLEGGSTMTFFRDSKIGIYQKMWRYMENRKTAVFVKT 713
            |:.|..:...||...|      ....:||:..|||....|.:...::..|.:|.:        |.
Zfish   662 EQYIDTVSGLSDKKFQKPQEHYPPFRFGTVPNGSTERNIRSNYPDMHTHMIKYNQ--------KG 718

  Fly   714 YEDGIKRVMEGSY-AFLMESTMLDYAVQRD--CNLTQIGG--LLDSKGYGIATPKGSPWRDKISL 773
            .|:.:..:..|.. ||:.::.:|:|...:|  |.|..||.  :..:.|||||..|.|.|:..|.|
Zfish   719 VEEALNSLKTGKLDAFIYDAAVLNYMAGKDEGCKLVTIGSGKVFATTGYGIALQKDSRWKRPIDL 783

  Fly   774 AILELQEKGIIQILYDKWWKNTGDVCNRDDKSKESKANALGVENIGGVFVVLLCGLALAVVVAIF 838
            |:|:....|..|.|...|   ...:|  .::..|..::.|.::|:.|||.:||..:.|:::|..:
Zfish   784 ALLQFLGDGDTQRLETVW---LSGIC--QNEKNEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAW 843

  Fly   839 E--FCWNSRKNLNTENQ 853
            |  ..|..|.:::..::
Zfish   844 EHLLYWKLRHSVHKSDR 860

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11155NP_651941.2 PBP1_iGluR_Kainate 44..410 CDD:107377 78/423 (18%)
ANF_receptor 61..393 CDD:279440 70/388 (18%)
PBP2_iGluR_Kainate 424..793 CDD:270432 120/416 (29%)
Lig_chan 555..829 CDD:278489 81/292 (28%)
grin2cbXP_009305071.2 PBP1_iGluR_NMDA_NR2 37..396 CDD:107373 80/434 (18%)
PBP2_iGluR_NMDA_Nr2 407..808 CDD:270436 121/426 (28%)
NMDAR2_C 845..>932 CDD:313729 2/16 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591859
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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