DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3C and PAKRP1

DIOPT Version :9

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_567423.1 Gene:PAKRP1 / 827054 AraportID:AT4G14150 Length:1292 Species:Arabidopsis thaliana


Alignment Length:683 Identity:202/683 - (29%)
Similarity:319/683 - (46%) Gaps:116/683 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFIFDSVYNMKTDTEVIYDEMC 69
            :||:||.:|:|:.|:.   ..|||      .::..|..:|.| .|.|||:.|.::..|.::..:.
plant    92 VKVIVRMKPLNKGEEG---DMIVE------KMSKDSLTVSGQ-TFTFDSIANPESTQEQMFQLVG 146

  Fly    70 YSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDEN-------FSNSTGIIPKCFDHIFERIS---- 123
            ..|||:.:.|:|.::|||||||.|||:||.|..|       ..:..|:.|:.|:.:|.||.    
plant   147 APLVENCLSGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLCGDQRGLTPRVFERLFARIKEEQV 211

  Fly   124 --MTTNVRYLALVTYLEIYNERIRDLLNKNENTNVINHFLKELPGIGVSVPTLTTQPVVNANQCY 186
              ....:.|....:.||||||:|.|||:.::...:|...:|.    ||.|..||.:.|.|.....
plant   212 KHAERQLNYQCRCSLLEIYNEQITDLLDPSQKNLMIREDVKS----GVYVENLTEEYVKNLTDVS 272

  Fly   187 DWLHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAGSERQ 251
            ..|..|..||.|.||.:|..|||||.:||..:|..  ..:: :|........:::||||||||||
plant   273 QLLIKGLGNRRTGATSVNTESSRSHCVFTCVVESR--CKNV-ADGLSSFKTSRINLVDLAGSERQ 334

  Fly   252 RKTGAQGDRLKEASQINLSLSALGNVISSLVD----GKAKHVPFRDSKLTRLLQDSLGGNTKTLM 312
            :.|||.|:|||||..||.|||.|||:|:.|.:    ||.:|:|:|||:||.|||:|||||.|..|
plant   335 KSTGAAGERLKEAGNINRSLSQLGNLINILAEISQTGKPRHIPYRDSRLTFLLQESLGGNAKLAM 399

  Fly   313 ISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPKDARLRQYQNEILYLK----RMLQESQQ 373
            :..:||:.....||.||||:|.|||.|.||..:||        ..|:::.:|:    ::..|.|:
plant   400 VCAVSPSQSCRSETFSTLRFAQRAKAIQNKAVVNE--------VMQDDVNFLRGVIHQLRDELQR 456

  Fly   374 IINKNNDPNKIIKSPLKIIQHTNMNSTKNVQII---DLGRNCKASFKTNNSILTKPNFPLIQSKE 435
            :.|..|:|.    :| .:...|..|:.:::.::   .||.......:.|:..:          :.
plant   457 MKNDGNNPT----NP-NVAYSTAWNARRSLNLLRSFGLGHPRSLPHEDNDGDI----------EM 506

  Fly   436 EVQLQARSR--IDLIKRSLIGGERI-HDF-ELKEKHMARKYAAQRHLSAIA-IALSRVKC----- 490
            |:...|..|  :.:..:|.:..|.| ||. .:|..|.:...:.::.|...: :|:....|     
plant   507 EIDEAAVERLCVQVGLQSSLASEGINHDMNRVKSIHSSDGQSIEKRLPEDSDVAMEDACCHTENH 571

  Fly   491 --EDRDLLQGHYATITQEIDIKNDYIRKCKEKIKMLEMEVSDLNSEFQ-LDREDYLDEIRNLGRQ 552
              |..|.::....|..:|..||.             ..:..|..|.|| |..:|.|....|....
plant   572 EPETVDNMRTETETGIRENQIKT-------------HSQTLDHESSFQPLSVKDALCSSLNKSED 623

  Fly   553 VKFHQQLFLKFSSNPGKFDRNWTPDTIL---------------QNSLWNDDLKMWRIPESDLIKL 602
            |          ||.|....::.|...:|               ..||..|.:....:.:|..:.:
plant   624 V----------SSCPDLVPQDVTSANVLIADGVDDPEHLVNSASPSLCIDPVGATPVLKSPTLSV 678

  Fly   603 PPATQKSGLHCIHPLVIHSENQHNNQNEIVVGE 635
            .| |.::....:....:.:.:|.:::.|.:|.|
plant   679 SP-TIRNSRKSLKTSELSTASQKDSEGENLVTE 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:277568 141/350 (40%)
Kinesin 10..339 CDD:278646 138/345 (40%)
PAKRP1NP_567423.1 PLN03188 2..1292 CDD:215621 202/683 (30%)
Motor_domain 92..434 CDD:277568 144/358 (40%)
Kinesin-relat_1 901..987 CDD:289481
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4280
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.770

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