DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3C and pav

DIOPT Version :10

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_477025.1 Gene:pav / 38515 FlyBaseID:FBgn0011692 Length:887 Species:Drosophila melanogaster


Alignment Length:748 Identity:164/748 - (21%)
Similarity:284/748 - (37%) Gaps:203/748 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 IKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKK----------FIFDSVYNMKT 59
            :.|..|.||: |::.:.....:......|:   ||..::.|..|          :||..|:....
  Fly    37 VNVFCRVRPL-QSDADLTSLRVKNSTTIAL---NPQDQLLQHHKPHNGAQREVQYIFKHVFQPDA 97

  Fly    60 DTEVIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGIIPKCFDHIFERIS- 123
            ..:.:|..:...|||:.::|.|..:|.||.||.|||:||.|:   ....||:|:|.|.:|..|| 
  Fly    98 TQQDVYAAVAQPLVENLLKGRNSLLFTYGVTGSGKTYTMTGN---LRHRGIMPRCLDVLFRTISD 159

  Fly   124 ----------------------------------------------------------------- 123
                                                                             
  Fly   160 YQAKKFVFKPDKLNGFEILSEEDALLERQHEMNQRFAGSGRFAFRHKDSDPEIASQASVEPIPLL 224

  Fly   124 -MTTNVRYLALVTYLEIYNERIRDLLNKNENTNVI-NHFLKELPGIGVSVPTLTTQPVVNANQCY 186
             :..:..|...|||:||||..:.|||..:.....: :..::|.....:.|..:|...|.......
  Fly   225 GLDEDNMYSVFVTYIEIYNNSVYDLLEDSGIQKTLQSKIIREDANRHMFVHGVTEVEVKTVEDAL 289

  Fly   187 DWLHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFG--------GICRGKLSLV 243
            :....|.|.:....|::|..|||||::|.|.|.|:|      :|:.|        .|...:||||
  Fly   290 EVFQMGQKRKRMGHTVLNAESSRSHSVFNIRLVQAP------TDSQGENVVQDRQNITVSQLSLV 348

  Fly   244 DLAGSERQRKTGAQGDRLKEASQINLSLSALGNVISSLVDGK--------AKHVPFRDSKLTRLL 300
            |||||||..:|...|.||:||..||.||..|...:..|.:.:        .|.||:||||:|.:.
  Fly   349 DLAGSERSSRTKNTGVRLREAGNINNSLMTLRTCLEYLRENQLAASNGLAPKKVPYRDSKITHMF 413

  Fly   301 QDSLGGNTKTLMISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPKDARLRQYQNEILYLK 365
            ::...|..:..||.||:|....|||.:..:::|          ::.::.:.||....:.::    
  Fly   414 KNYFDGEGQVSMIVCINPRIEDYDENMQVMKFA----------EMTQEVQIARATPMKQDL---- 464

  Fly   366 RMLQESQQIINKNNDPNKIIKSPLKIIQHTNMNSTKNVQIIDLGRNCKASFKTNNSILTKPNFPL 430
                   .:.......||:.|..:..:....:...|::: :|:|......          |:||.
  Fly   465 -------GLTPGRRKANKLFKIAVNNLNELGIPEAKDLE-VDVGLVYSLG----------PDFPA 511

  Fly   431 IQ-SKEEVQLQARSRIDLIKRSLIGGERIHDFELKEKHMARKYAAQRHLSAIAIALSRVKCE--- 491
            .: ...|.|::.|             |.:|   ..|:.:.::...:.:|.        :||:   
  Fly   512 YEMDSPEAQIKIR-------------ELMH---YLEQRIEKRKKLRANLD--------IKCDSFR 552

  Fly   492 ------DRDLLQ--GHYATITQEIDIKNDYIRKCKEKIKMLEMEVSDLNS-----EFQLDREDY- 542
                  |||.||  ...|::......:.|.....::|:::.|..:..||:     |.|::...: 
  Fly   553 QMLMNLDRDNLQLRTELASLKAVYKQERDRSAALEKKVRIHESSIDVLNNTLSKQERQIEELTFK 617

  Fly   543 LDEIRNL---------GRQVKFHQQLFLKFSSNPGKFDRNWTPDTI-LQNSLWNDDLKMWRIPES 597
            |:|..|:         .::.||..:|.::...|..:|:.......: ||..:        ||.:.
  Fly   618 LNEKENMLTQKEHEKEKQKKKFSSKLAVESDKNKREFELKLREQRVKLQERM--------RIKDE 674

  Fly   598 DLIKLPPATQKSGLHCIHPLVIHSENQHNNQNE 630
            .|..:....|...|    |.:..|::..|..||
  Fly   675 KLRLVSNILQSEDL----PSLPRSQSSENILNE 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:473979 111/427 (26%)
pavNP_477025.1 KISc_KIF23_like 35..450 CDD:276819 111/435 (26%)
PRK03918 <522..>687 CDD:235175 34/196 (17%)
MKLP1_Arf_bdg 734..840 CDD:465166
Blue background indicates that the domain is not in the aligned region.

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