DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Kif3C and Kif28

DIOPT Version :9

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_001357826.1 Gene:Kif28 / 383592 MGIID:2686151 Length:1033 Species:Mus musculus


Alignment Length:635 Identity:181/635 - (28%)
Similarity:289/635 - (45%) Gaps:153/635 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SENIKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFIFDSVY----NMKTDTE 62
            |::::|.||.||.:|.||....|.::.::...:|:.:|... .:.|.|.||..|    ..:.|.:
Mouse    14 SDSVRVAVRVRPFSQREKNSGSQCVISMHSGNISIRDPKNE-ERVKTFTFDLTYWSHDGFQKDED 77

  Fly    63 ----------------VIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGII 111
                            .::.::...:::|...|||.|:.||||||.||:::|.|   |..:.|:|
Mouse    78 GVLIPSDPASKFAGQSDVFHDIGRGILDSAWRGYNATLLAYGQTGSGKSYSMIG---FGTNKGLI 139

  Fly   112 PKCFDHIFERI-SMTTNVRYLALVTYLEIYNERIRDLLNKNENTNVINHFLKELPGIGVSVPTLT 175
            |:..:.:|:.| ....|:....:.:.||||||:|||||::.:....:.  ::|...:|..|..|.
Mouse   140 PRVCEELFQAIEKQKENLEPQVMFSMLEIYNEQIRDLLSRTKAPGGLR--VREDQQLGFFVEGLK 202

  Fly   176 TQPVVNANQCYDWLHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKL 240
            ..|..|..|....:..|:|.|:||:|.||.:|||||.:..|..:| .||::..:.      |..:
Mouse   203 WVPCENYAQIEKLVEQGSKIRMTASTNMNASSSRSHMLIAIQFKQ-VFLDTALTK------RSSI 260

  Fly   241 SLVDLAGSERQRKTGAQGDRLKEASQINLSLSALGNVISSLVD----GKAKHVPFRDSKLTRLLQ 301
            ::||||||||||.:|::||||:|.|::||||::||||||:|.|    .|..|:|:|||.||:|||
Mouse   261 NMVDLAGSERQRSSGSEGDRLREGSRVNLSLTSLGNVISALADLAMGKKVLHIPYRDSVLTKLLQ 325

  Fly   302 DSLGGNTKTLMISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPKDARLRQYQNEIL---- 362
            .:||||::|.:|:.:||.||.|:||:||||||.|||.:.|:..||..|. ||..:.:|.:|    
Mouse   326 SALGGNSRTTLIAALSPADICYEETLSTLRYAERAKKVRNRAVINTCPL-ARASRAENALLLGFR 389

  Fly   363 ------------------------------------YLKRMLQESQQI------INKNNDPNKII 385
                                                ..:.:.||.:.:      :|.|.||.  :
Mouse   390 GAGAAEHPACFWAEQQLGNQGTWAQLLEQARREWEEQYEALTQEQKMVRILPHLLNVNEDPQ--L 452

  Fly   386 KSPLKIIQHTNMNSTKNVQIIDLGRNCK--------------ASF-KTNNSILTKPNFPLIQSKE 435
            ...||...|...        .|:||...              ||| ..:..:...|:........
Mouse   453 TGVLKFFIHNGS--------CDVGRAASNAICLQGLGISDKHASFVNLDGKVTVAPHSKCKVIVN 509

  Fly   436 EVQLQARSRIDLIKRSLIGGERI-------------------HDFELKEKHMARKYAA------- 474
            .|.:..|:::..:.|.::|....                   :||...|:..|...:.       
Mouse   510 GVPVTGRTKLQHLDRIILGSNSAFLYVGFPSERGAEDLSRFDYDFFQLERAAAEGVSVATLGCVS 574

  Fly   475 ----QRHLSAIAIALSRVKC---------EDRDLLQGHYATITQEIDIKN 511
                |...|.:|:....||.         ...:|.:|    :|.|:.:||
Mouse   575 PGDDQADPSILAVFQDYVKLMPLVVEANQMSEELKKG----LTMELKVKN 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:277568 137/360 (38%)
Kinesin 10..339 CDD:278646 135/353 (38%)
Kif28NP_001357826.1 Motor_domain 15..370 CDD:354959 138/367 (38%)
FHA 440..537 CDD:238017 18/106 (17%)
KIF1B 655..693 CDD:372100
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
32.870

Return to query results.
Submit another query.