DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3C and kif1b

DIOPT Version :10

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:XP_068072796.1 Gene:kif1b / 369190 ZFINID:ZDB-GENE-030820-1 Length:1927 Species:Danio rerio


Alignment Length:739 Identity:223/739 - (30%)
Similarity:339/739 - (45%) Gaps:164/739 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NIKVVVRCRPMN--QTEKERNCQNIVEINEFAVSVTNPSARISQQKKFIFDSVYNMKTDTE---- 62
            ::||.||.||.|  :|.||..|  |:::...:.::.||. ...:.|.|.||..|...|..:    
Zfish     5 SVKVAVRVRPFNSRETGKESKC--IIQMQGNSTTILNPK-NPKEPKTFSFDYSYWSHTSPDDPSF 66

  Fly    63 ----VIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGIIPKCFDHIFERIS 123
                .:|:::...:::...||||..||||||||.||::||.|.:. ....||||:..:.:||:|:
Zfish    67 ASQNQVYNDIGKEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-EGQEGIIPQLCEELFEKIN 130

  Fly   124 MTTN--VRYLALVTYLEIYNERIRDLLN-KNENTNVINHFLKELPGIGVSVPTLTTQPVVNANQC 185
            ...|  :.|...|.|:|||.||:||||| ||:.    |..::|.|.:|..|..|:...|.:....
Zfish   131 DNNNEEISYSVEVAYMEIYCERVRDLLNPKNKG----NLRVREHPLLGPYVEDLSKLAVTSYTDI 191

  Fly   186 YDWLHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPF--LNSIGSDAFGGICRGKLSLVDLAGS 248
            .|.:..|||.|..|||.||:.|||||.:|||...|..:  ...:.::..     .|:||||||||
Zfish   192 ADLMDAGNKARTVAATNMNETSSRSHAVFTIVFTQRKYDSETDLSTEKV-----SKISLVDLAGS 251

  Fly   249 ERQRKTGAQGDRLKEASQINLSLSALGNVISSL--VDG---------KAKHVPFRDSKLTRLLQD 302
            ||...|||:|.||||.:.||.||:.||.|||:|  ||.         |...:|:|||.||.||::
Zfish   252 ERADSTGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRE 316

  Fly   303 SLGGNTKTLMISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPKDARLRQYQNEILYLKRM 367
            :||||::|.|::.:||.||::|||:||||||.|||.|.....|||||....:|:.::|:..||.:
Zfish   317 NLGGNSRTAMVAALSPADINFDETLSTLRYADRAKQIKCNAVINEDPNAKLVRELKDEVSRLKEL 381

  Fly   368 L--QESQQIINKNNDPNKIIKSPLKIIQHTNMNSTKNVQIIDLGR---------NCKASFKTNNS 421
            |  |....|::.....:..:.|..|.::..:.|..:.:...:..|         .|..:..::.|
Zfish   382 LRAQGLGDILDIEPMGDDCLGSGSKYLKDIHNNKHRYLLASENQRPGHFSTAPMGCLTASPSSGS 446

  Fly   422 ILTKPNFPLIQSKEEVQLQARSRIDLIKRSLIGGERIHDFELKEKHMARKYAAQRHLSAIAIALS 486
            :.::.....:.|.:|       ||    .|..|||.                          |:.
Zfish   447 LCSQAGLQSVSSIQE-------RI----MSTPGGEE--------------------------AIE 474

  Fly   487 RVKCEDRDLLQGHYATITQEIDIKNDYIRKCKEKIKMLEMEVSDLN----------SEFQLDR-- 539
            |:| |...::.....|..:::. |.:.||..:|.: :.||.|:...          .:|..||  
Zfish   475 RLK-ESEKIIAELNETWEEKLR-KTEAIRMEREAL-LAEMGVAIREDGGTLGVFSPKKFGPDRPT 536

  Fly   540 ----EDYLDEIRNLGRQVKFHQQLFLK-----FSSNPGKFDRNWTPDTILQNS--LWNDDLKMW- 592
                ||:         .|....|||::     ::...|.|....||..:..|.  |.::.|..: 
Zfish   537 SLSIEDF---------SVYSSNQLFVERPCEVYTDFNGVFSPKKTPHLVNLNEDPLMSECLLYYI 592

  Fly   593 -----RIPESDL-----IKLPPATQKSGLHCI---------HPLV----------------IHSE 622
                 |:.::|.     |.|..|..|.. |||         |.:|                ::|.
Zfish   593 KDGITRVGQADAERRQDIVLSGAHIKEE-HCIFRSERNANGHVIVTLEPCEGSETYVNGKRVNSA 656

  Fly   623 NQHNNQNEIVVGEKVSISNIAFLF 646
            .|..:.|.|::|:     |..|.|
Zfish   657 VQLRSGNRIIMGK-----NHVFRF 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:473979 149/360 (41%)
kif1bXP_068072796.1 KISc_KIF1A_KIF1B 4..360 CDD:276816 150/367 (41%)
Kinesin_assoc 357..596 CDD:465047 54/287 (19%)
FHA_KIF1B 571..680 CDD:438779 24/111 (22%)
GBP_C <680..754 CDD:293879
KIF1B 889..937 CDD:463574
KIF1B <999..1021 CDD:463574
DUF3694 1373..1529 CDD:463599
PH_KIFIA_KIFIB 1808..1910 CDD:269939
Blue background indicates that the domain is not in the aligned region.

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