DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3C and Kif5a

DIOPT Version :10

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_997688.1 Gene:Kif5a / 314906 RGDID:1303035 Length:1027 Species:Rattus norvegicus


Alignment Length:564 Identity:186/564 - (32%)
Similarity:279/564 - (49%) Gaps:69/564 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NIKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFIFDSVYNMKTDTEVIYDEM 68
            :|||:.|.||:||.|       |:..::|........:.|...|.::||.|:...|..|.:|...
  Rat     9 SIKVLCRFRPLNQAE-------ILRGDKFIPIFQGDDSVIIGGKPYVFDRVFPPNTTQEQVYHAC 66

  Fly    69 CYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGIIPK----CFDHIFERISMTTNVR 129
            ...:|:..:.||||||||||||..||||||:|..:.....||||:    .|:||:   ||..|:.
  Rat    67 AMQIVKDVLAGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIARDIFNHIY---SMDENLE 128

  Fly   130 YLALVTYLEIYNERIRDLLNKNENTNVINHFLKELPGIGVSVPTL---TTQPVVNANQCYDWLHF 191
            :...|:|.|||.::|||||:..: ||:..|..|.      .||.:   |.:.|.:..:..|.:..
  Rat   129 FHIKVSYFEIYLDKIRDLLDVTK-TNLSVHEDKN------RVPFVRGCTERFVSSPEEILDVIDE 186

  Fly   192 GNKNRVTAATLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAGSERQRKTGA 256
            |..||..|.|.||::|||||:||.|.::|    .:|.::.   ...|||.|.||||||:..||||
  Rat   187 GKSNRHVAVTNMNEHSSRSHSIFLINIKQ----ENIETEQ---KLSGKLYLADLAGSEKVSKTGA 244

  Fly   257 QGDRLKEASQINLSLSALGNVISSLVDGKAKHVPFRDSKLTRLLQDSLGGNTKTLMISCISPTDI 321
            :|..|.||..||.||||||||||:|.:|...:||:||||:||:||||||||.:|.|..|.||:..
  Rat   245 EGAVLDEAKNINKSLSALGNVISALAEGTKSYVPYRDSKMTRILQDSLGGNCRTTMFICCSPSSY 309

  Fly   322 HYDETISTLRYASRAKNISNKPKIN-EDPKDARLRQYQNEILYLKRMLQESQQIINK-------- 377
            :..||.|||.:..|||.|.|...:| |...:...::|:.|    |...:..::.|.|        
  Rat   310 NDAETKSTLMFGQRAKTIKNTASVNLELTAEQWKKKYEKE----KEKTKAQKETIAKLEAELSRW 370

  Fly   378 NNDPNKIIKSPL---------KIIQHTNMNSTKNVQIIDLGRNCKASFKTNNSILTKPNFPLIQS 433
            .|..|......|         :|.:.|.:|...:: ::.:....:..::.....|.|.    :..
  Rat   371 RNGENVPETERLAGEDSALAAEICEETPVNDNSSI-VVRIAPEERQKYEEEIRRLYKQ----LDD 430

  Fly   434 KEEVQLQARSRIDLIKRSLIGGERIHDFELKEKHMARKYAAQRHLSAIAIALSRVKCEDRDLLQG 498
            |::...|....|:.:|:.::..|     ||...........||.||.:.......|.|.:::||.
  Rat   431 KDDEINQQSQLIEKLKQQMLDQE-----ELLVSTRGDNEKVQRELSHLQSENDAAKEEVKEVLQA 490

  Fly   499 ------HYATITQEIDIKNDYIRKCKEKIKMLEMEVSDLNSEFQ 536
                  :|...:||::.|:...:...:::......:..|.||.|
  Rat   491 LEELAVNYDQKSQEVEEKSQQNQLLVDELSQKVATMLSLESEPQ 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:473979 146/341 (43%)
Kif5aNP_997688.1 KISc_KHC_KIF5 7..327 CDD:276820 146/341 (43%)
Microtubule-binding. /evidence=ECO:0000255 174..315 73/147 (50%)
Necessary for interaction with ZFYVE27. /evidence=ECO:0000250|UniProtKB:P33175 271..361 37/93 (40%)
Interaction with BICD2. /evidence=ECO:0000250|UniProtKB:Q12840 353..1027 33/192 (17%)
PRK03918 <409..920 CDD:235175 25/135 (19%)
Khc_CBD_cc 832..901 CDD:467880
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 906..936
Globular. /evidence=ECO:0000255 907..1027
Blue background indicates that the domain is not in the aligned region.

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