back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Kif3C and klp2

DIOPT Version :10

Sequence 1:	NP_651939.4	Gene:	Kif3C / 43820	FlyBaseID:	FBgn0039925	Length:	649	Species:	Drosophila melanogaster
Sequence 2:	NP_593458.1	Gene:	klp2 / 2543360	PomBaseID:	SPAC664.10	Length:	817	Species:	Schizosaccharomyces pombe

Alignment Length:	352	Identity:	135/352 - (38%)
Similarity:	196/352 - (55%)	Gaps:	35/352 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 NIKVVVRCR-PMNQTEKERNC---QNIVEINEFAVSVTNPSARIS----QQKKFIFDSVYNMKTD 60
            ||:|..|.| |:...|..:..   || .|.:...:....|.:.::    :|..|.||.|::.:|.
pombe   473 NIRVFCRVRPPLGDGESAQIAFPDQN-SEASTIEIVAQAPGSSLTGNGIKQYAFNFDRVFSPETT 536

  Fly    61 TEVIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGIIPKCFDHIFERISMT 125
            .|.:::|:. .|::|.::|||..||||||||.||||||      |::||:||.....|:.|   :
pombe   537 NEDVFNELS-QLIQSAMDGYNVCIFAYGQTGSGKTHTM------SSNTGMIPSSVRMIYNR---S 591

  Fly   126 TNVR-----YLALVTYLEIYNERIRDLL---NKNENTNVINHFLKELPGIGVSVPTLTTQPVVNA 182
            |:::     |.....:||||||.|.|||   |:.|..........:......::..:|::|:...
pombe   592 TSLKERGWEYRMEGQFLEIYNETIIDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTP 656

  Fly   183 NQCYDWLHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAG 247
            .|....|...:|||..|||..|::|||||::|.:.|..|       :...|..||..|:|:||||
pombe   657 EQVTWLLDQASKNRSVAATNANEHSSRSHSVFMLHLNGS-------NSTTGETCRSTLNLIDLAG 714

  Fly   248 SERQRKTGAQGDRLKEASQINLSLSALGNVISSLVDGK-AKHVPFRDSKLTRLLQDSLGGNTKTL 311
            |||...:.:.|:||||...||.|||.||:||.:|..|| ..::|:|:||||.|||.|||||:|||
pombe   715 SERLSSSQSVGERLKETQAINKSLSCLGDVIHALGSGKEGTYIPYRNSKLTNLLQYSLGGNSKTL 779

  Fly   312 MISCISPTDIHYDETISTLRYASRAKN 338
            |...|||...|..||:.:||:|::..|
pombe   780 MFVNISPLKQHVPETLCSLRFATKVNN 806

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.