DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3C and Kif1c

DIOPT Version :10

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:XP_036012244.1 Gene:Kif1c / 16562 MGIID:1098260 Length:1112 Species:Mus musculus


Alignment Length:382 Identity:153/382 - (40%)
Similarity:217/382 - (56%) Gaps:26/382 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NIKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFIFDSVYNMKTDTE------ 62
            ::||.||.||.|..|..::.:.:|.:.....|:.||.......|.|.||..|...|..|      
Mouse     5 SVKVAVRVRPFNARETSQDAKCVVSMQGNTTSIINPKQSKDAPKSFTFDYSYWSHTSVEDPQFAS 69

  Fly    63 --VIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGIIPKCFDHIFERISM- 124
              .:|.::...::....||||..||||||||.||::||.|.:. ....||:|:..:.:|.|::: 
Mouse    70 QQQVYRDIGEEMLLHAFEGYNVCIFAYGQTGAGKSYTMMGRQE-PGQQGIVPQLCEDLFSRVNVN 133

  Fly   125 -TTNVRYLALVTYLEIYNERIRDLLNKNENTNVINHFLKELPGIGVSVPTLTTQPVVNANQCYDW 188
             :..:.|...|:|:|||.||:|||||.....::   .::|.|.:|..|..|:...|.:.....|.
Mouse   134 QSAQLSYSVEVSYMEIYCERVRDLLNPKSRGSL---RVREHPILGPYVQDLSKLAVTSYADIADL 195

  Fly   189 LHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPF--LNSIGSDAFGGICRGKLSLVDLAGSERQ 251
            :..|||.|..|||.||:.|||||.:|||...|...  |..:.|:..     .|:||||||||||.
Mouse   196 MDCGNKARTVAATNMNETSSRSHAVFTIVFTQRSHDQLTGLDSEKV-----SKISLVDLAGSERA 255

  Fly   252 RKTGAQGDRLKEASQINLSLSALGNVISSLVD-----GKAKHVPFRDSKLTRLLQDSLGGNTKTL 311
            ..:||:|.||||.:.||.||:.||.|||:|.|     .|:..:|:|||.||.||:::||||::|.
Mouse   256 DSSGARGMRLKEGANINKSLTTLGKVISALADLQSKKRKSDFIPYRDSVLTWLLKENLGGNSRTA 320

  Fly   312 MISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPKDARLRQYQNEILYLKRML 368
            ||:.:||.||:|:||:||||||.|.|.|.....|||||....:|:.|.|:..|:.:|
Mouse   321 MIAALSPADINYEETLSTLRYADRTKQIRCNAVINEDPNARLIRELQEEVARLRDLL 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:473979 142/351 (40%)
Kif1cXP_036012244.1 KISc_KIF1A_KIF1B 4..355 CDD:276816 143/358 (40%)
Kinesin_assoc 352..522 CDD:465047 10/26 (38%)
FHA_KIF1C 498..599 CDD:438780
Blue background indicates that the domain is not in the aligned region.

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