DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kif3C and kif1b

DIOPT Version :10

Sequence 1:NP_651939.4 Gene:Kif3C / 43820 FlyBaseID:FBgn0039925 Length:649 Species:Drosophila melanogaster
Sequence 2:XP_012822406.1 Gene:kif1b / 100379810 XenbaseID:XB-GENE-1013591 Length:1810 Species:Xenopus tropicalis


Alignment Length:772 Identity:224/772 - (29%)
Similarity:337/772 - (43%) Gaps:205/772 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NIKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFIFDSVYNMKTDTE------ 62
            ::||.||.||.|..|..:..:.|:::...:.|:.||.......|.|.||..|...|..:      
 Frog     5 SVKVAVRVRPFNSRELSKESKCIIQMQGNSTSIINPKNPKEAAKSFSFDYSYWSHTSQDDPCFAS 69

  Fly    63 --VIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQGDENFSNSTGIIPKCFDHIFERISMT 125
              .:|:::...::|...||||..||||||||.||::||.|.:. ....||||:..:.:||:|:..
 Frog    70 QSRVYNDIGKEMLEHAFEGYNVCIFAYGQTGAGKSYTMMGKQE-ETQAGIIPQLCEDLFEKINDN 133

  Fly   126 TN--VRYLALVTYLEIYNERIRDLLN-KNENTNVINHFLKELPGIGVSVPTLTTQPVVNANQCYD 187
            .|  |.:...|:|:|||.||:||||| ||:.    |..::|.|.:|..|..|:...|.:.....|
 Frog   134 NNDEVSFSVEVSYMEIYCERVRDLLNPKNKG----NLRVREHPLLGPYVEDLSKLAVTSYTDIAD 194

  Fly   188 WLHFGNKNRVTAATLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAGSERQR 252
            .:..|||.|..|||.||:.|||||.:|||...|...  .||:: .......|:||||||||||..
 Frog   195 LMDAGNKARTVAATNMNETSSRSHAVFTIVFTQKRL--DIGTN-LSTEKVSKISLVDLAGSERAD 256

  Fly   253 KTGAQGDRLKEASQINLSLSALGNVISSL--VDG---------KAKHVPFRDSKLTRLLQDSLGG 306
            .|||:|.||||.:.||.||:.||.|||:|  ||.         |...:|:|||.||.||:::|||
 Frog   257 STGAKGTRLKEGANINKSLTTLGKVISALAEVDNCTSKSKKKKKTDFIPYRDSVLTWLLRENLGG 321

  Fly   307 NTKTLMISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPKDARLRQYQNEILYLKRMLQ-- 369
            |::|.|::.:||.||:||||:||||||.|||.|.....|||||....:|:.::|:..||.:|:  
 Frog   322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIKCNAVINEDPNAKLVRELKDEVTRLKDLLRAQ 386

  Fly   370 ---------------------ESQQIINK------NNDPNKI----------------------- 384
                                 :::.:.||      |..|...                       
 Frog   387 GLGDILDTLPSVGCFPISDMNDNENLKNKYLLANENQRPGNFSTASISSLASSPSSCSLSSQVGL 451

  Fly   385 ----------------------IKSPLKIIQHTN------MNSTKNVQ------IIDLGRNCKAS 415
                                  :|...|||...|      :..|:.::      :.::|...:..
 Frog   452 TSVTSIQERIMSTPGGEEAIERLKESEKIIAELNETWEEKLRKTEAIRMDREALLAEMGVAIRED 516

  Fly   416 FKTNNSILTKPNFPLIQSKEEV------------------QLQARSRIDLI-------------- 448
            ..|......|....|:...|:.                  |..|.||.|::              
 Frog   517 GGTLGVFSPKKTPHLVNLNEDPLMSECLLYYIKDGLTRVGQADADSRQDIVLSGAHIKEEHCIFR 581

  Fly   449 ------------------KRSLIGGER-IHDFELK--------EKHMAR-----KYAAQRHLSAI 481
                              ..:.:.|:| :|..||:        :.|:.|     :..|:|..:..
 Frog   582 SERNSNGEVIVTLEPGDRSETYVNGKRVVHPVELRSGNRIIMGKNHVFRFNHPEQARAEREKTPS 646

  Fly   482 AIALSRV---KCEDRDLLQGHYATITQEIDIKNDYIRKCKEKIKML---EMEVSDLNSEFQLDRE 540
            |...|..   ....|:||:      .|.||:|.:..::.:| :::|   |.|.:||..|.|  |.
 Frog   647 AETPSEPVDWTFAQRELLE------KQGIDMKQEMEKRLQE-MEILYKKEKEEADLLLEQQ--RL 702

  Fly   541 DYLDEIRNLGRQVKFHQQLFLKFSSNPGKFDRNWTPDTILQN----SLWNDDLKMWR 593
            ||..:::.|.:||:.|.  ....:::.|:.:....|.|  |:    :||  ..|.||
 Frog   703 DYESKLQALQKQVETHS--LAAETTDDGEEEEEEVPWT--QHEYDVALW--AFKKWR 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kif3CNP_651939.4 Motor_domain 3..339 CDD:473979 151/356 (42%)
kif1bXP_012822406.1 KISc_KIF1A_KIF1B 4..361 CDD:276816 152/363 (42%)
Kinesin_assoc 358..552 CDD:465047 25/193 (13%)
FHA_KIF1B 527..636 CDD:438779 14/108 (13%)
GimC 659..>716 CDD:440992 20/65 (31%)
KIF1B 843..890 CDD:463574
KIF1B <954..973 CDD:463574
DUF3694 1262..1407 CDD:463599
PH_KIFIA_KIFIB 1691..1793 CDD:269939
Blue background indicates that the domain is not in the aligned region.

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