DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pho and CMR3

DIOPT Version :9

Sequence 1:NP_524630.1 Gene:pho / 43819 FlyBaseID:FBgn0002521 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_015338.1 Gene:CMR3 / 856123 SGDID:S000006217 Length:317 Species:Saccharomyces cerevisiae


Alignment Length:318 Identity:73/318 - (22%)
Similarity:119/318 - (37%) Gaps:105/318 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 VGASDLL---KGKEEFGIDGFTSQQNKEYQKMESKFTNAQTLEMPHPISS--------------- 229
            |.|.|.|   ||.:.:|.:.:         |.|.:..|:..:.:| ||||               
Yeast    40 VSAVDQLSTGKGTQFYGHNSY---------KNERECYNSTKINLP-PISSLLPNFENNTPPNVDS 94

  Fly   230 -VQIMDHLIKERGNL--------------------------SQE---NNISERILSKTTLSFEEP 264
             ||.....:.:..|:                          ||:   ::.|..:.|...|..  |
Yeast    95 RVQFPPQQVYQSMNVVPIVNEIYTPISMNATSDQYPIYYTESQQPIPHSQSPHLTSSAPLMM--P 157

  Fly   265 ILLP---------DSSSIELVNETAAMTINNHRTLSNHTGNTGDL-HALPSSVPFRIGLHEGQVN 319
            :::|         |...|.:.:|.....|    ::::|.....:| |..|.|||...|:      
Yeast   158 VMVPTVYKPLTPYDKEPITIASEPNFTAI----SMASHPNAALELCHDRPKSVPPGYGV------ 212

  Fly   320 DCLSTISQSTHQDNTDSTGCGEMNLSEVTVSYTNDKKIACPHKGCNKHFRDSSAMRKHLHTHGPR 384
              |.|:.:::: ..|.|.....:|.|.....:..|.:|:            |:.:||.       
Yeast   213 --LPTMQEASN-GRTKSEPGAVLNGSATFSDWKTDTRIS------------STKLRKQ------- 255

  Fly   385 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDR 442
               |..|||.....|.||.|.|:|||:.||:||:|||.|.|::..|:..|::.|...|
Yeast   256 ---CPVCGKICSRPSTLKTHYLIHTGDTPFKCTWEGCTKSFNVKSNMLRHLKSHERKR 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phoNP_524630.1 Transpos_assoc <342..382 CDD:290671 7/39 (18%)
C2H2 Zn finger 359..381 CDD:275368 3/21 (14%)
COG5048 <386..515 CDD:227381 25/57 (44%)
zf-C2H2 386..408 CDD:278523 9/21 (43%)
C2H2 Zn finger 388..408 CDD:275368 9/19 (47%)
zf-H2C2_2 401..426 CDD:290200 15/24 (63%)
C2H2 Zn finger 416..438 CDD:275368 9/21 (43%)
zf-H2C2_2 430..457 CDD:290200 4/13 (31%)
C2H2 Zn finger 446..468 CDD:275368
CMR3NP_015338.1 COG5048 17..316 CDD:227381 73/318 (23%)
C2H2 Zn finger 256..276 CDD:275370 9/19 (47%)
C2H2 Zn finger 284..306 CDD:275370 9/21 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1943
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.