DRSC/TRiP Functional Genomics Resources

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Protein Alignment pho and scrt-1

DIOPT Version :10

Sequence 1:NP_524630.1 Gene:pho / 43819 FlyBaseID:FBgn0002521 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_491001.2 Gene:scrt-1 / 183848 WormBaseID:WBGene00016948 Length:178 Species:Caenorhabditis elegans


Alignment Length:125 Identity:49/125 - (39%)
Similarity:61/125 - (48%) Gaps:11/125 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   350 SYTNDKKIACPHKGCNKHFRDSSAMRKHLH--THGPRVHVCAECGKAFVESSKLKRHQLVHTGEK 412
            |..:|.....|......:...||...|.|.  |..| |..|..|||.|.....|:.|...|||||
 Worm    57 SLHSDSPSLSPSTTVTSYSTPSSPDGKQLKFATCSP-VCQCKVCGKRFSRQWLLQGHLRTHTGEK 120

  Fly   413 PFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPFVCPFDACNKKFAQSTNLKSHILTHAKAK 472
            ||||  |.|.|||:...|||.|::.|:|.:|..||  .|.|.||    |||::..|.::|
 Worm   121 PFQC--EICSKRFADKSNLRAHIQTHSGTKPHKCP--RCGKSFA----LKSYLSKHEESK 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phoNP_524630.1 C2H2 Zn finger 359..381 CDD:275368 5/23 (22%)
COG5048 <386..515 CDD:227381 39/87 (45%)
C2H2 Zn finger 388..408 CDD:275368 7/19 (37%)
zf-H2C2_2 401..426 CDD:463886 15/24 (63%)
C2H2 Zn finger 416..438 CDD:275368 10/21 (48%)
zf-H2C2_2 430..457 CDD:463886 12/26 (46%)
C2H2 Zn finger 446..468 CDD:275368 9/21 (43%)
scrt-1NP_491001.2 zf-C2H2 94..116 CDD:395048 7/21 (33%)
C2H2 Zn finger 96..116 CDD:275368 7/19 (37%)
zf-H2C2_2 109..132 CDD:463886 15/24 (63%)
C2H2 Zn finger 124..144 CDD:275368 10/21 (48%)
zf-H2C2_2 136..160 CDD:463886 11/25 (44%)
C2H2 Zn finger 152..168 CDD:275368 9/21 (43%)

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