DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bt and Sspo

DIOPT Version :9

Sequence 1:NP_001162825.1 Gene:bt / 43814 FlyBaseID:FBgn0005666 Length:8933 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:1016 Identity:189/1016 - (18%)
Similarity:300/1016 - (29%) Gaps:392/1016 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly  4306 RPPINDG-------GSPITGYVVEKREKGTDKWIKGTEITIPCLGEECKATVPTLNENC--EYEF 4361
            |||.|.|       ||                 ...|..|.||..|.|      ||..|  |..|
  Rat  1782 RPPQNGGQDCALLPGS-----------------THSTHQTSPCPQEGC------LNVTCFGELVF 1823

  Fly  4362 R-----------VKAINAAGPGEPSDA-------SKPIITKPRKLAPK-----IDRKNIRTYNFK 4403
            |           :.......|..|..:       .|.:.|:.|.:.|:     :|  .||   :.
  Rat  1824 RPCAPCPLTCDDISGEAVCSPDRPCSSPGCWCPEGKVLGTEGRCVRPRQCPCLVD--GIR---YW 1883

  Fly  4404 SGEPIFLDINI----SGEP---------APDVTWNQNNKSVQTTSFSHIENLPYNTKYINNNPER 4455
            .|:.|.:|..:    .|:|         |.|..|:..:...:.......::|.::.: ..|||..
  Rat  1884 PGQRIKMDCQLCFCQDGQPHRCRPNPECAVDCGWSSWSPWAECLGPCSSQSLQWSFR-SPNNPRL 1947

  Fly  4456 KDTGLYKISAHNFYGQDQVEFQINIITKPGKPEGPLEVSEVHKDGCKL---------KWKKPKDD 4511
            ...|......|....:.|.|              |.|       ||:.         :|:     
  Rat  1948 SGHGRQCRGIHRKARRCQTE--------------PCE-------GCEQWGLTYHVGERWR----- 1986

  Fly  4512 GGEPVESYLVEKFDPDTGIWLPVGRSDGPEYNVDGL--------VPGHDYKFRVKAVNKEGESEP 4568
            ||.......:.:.......:.|:|........|:|:        :||                  
  Rat  1987 GGPCTVCECLHRSITRCSPYCPIGSCPQSWVLVEGMGESCCHCALPG------------------ 2033

  Fly  4569 LETLGSIIAKDPFSVPTKPGVPEPTDWTANKVELAWPEPASDGGSPIQGYIV-EVKDK-YSPLWE 4631
                     |:...:|.....|.||             |:...|:.:..|:: .:.|. ||||..
  Rat  2034 ---------KNQTMIPVTTPAPVPT-------------PSPQIGASLVTYVLPPMSDACYSPLGL 2076

  Fly  4632 KALETNSPTPTATVQGLIEGNEYQFRV--VALNKGGLSEPSDPSKIFTAKPRYLAPKID---RRN 4691
            ..|.|.:|:     |.|    |:..|.  |.....|.....|....:..:|.||  ::|   .||
  Rat  2077 AGLPTWAPS-----QPL----EHSTRAAPVEAPTAGPGPREDAYAEWHTQPLYL--QLDLLWPRN 2130

  Fly  4692 LRNITLS-SGTALKLDANITGE-------------------PAPKVEWKLSNYHLQSGKNVTIET 4736
            |..|.:. :|::....:|::.:                   |.||...:.||:.:          
  Rat  2131 LTGIMVQRAGSSAAYISNLSLQFSSDGLQWHSVLNSLSSTLPPPKPSPESSNHMV---------- 2185

  Fly  4737 PDYYT---KLVIRPTQRSDSGEYLVTATNTSGKDSVLVNVVITDKPSPPNGPLQISDVHK---EG 4795
            |:.:|   .:..|..:....|.:|   .:.:.:|..|...::..||.||..||.....|:   ..
  Rat  2186 PEVWTFDQMVQARYIRVWPHGSHL---RDNNQQDIFLWVELLGCKPVPPLAPLCPGTRHRCANGD 2247

  Fly  4796 CHLKWKRPSDDGGTPIEYFQIDKLEPETGCWIPSCRSTEPQVDVT----GLSPGNEYKF------ 4850
            |.||       ||........:....|.||. |...||..:|..|    .|||....||      
  Rat  2248 CALK-------GGPCDGAVDCEDGSDEEGCG-PLRASTASRVHSTARTPALSPTQPGKFPFHPRE 2304

  Fly  4851 -------------------RVSAVNAEGESQPLVGD--ESIVARNPFDEPGKPENLK-------A 4887
                               .||...:|| ..|:.|.  :::...:.|     |..||       |
  Rat  2305 GLADMEHQQPKQESPMPSAGVSPSASEG-LLPVSGQSMQTLTTTSTF-----PPGLKSLHPGMAA 2363

  Fly  4888 TDWDKDHVDLAWTP----------PLID-GGSPISCYI---IEKQDKYGKWERALDVPADQ-CKA 4937
            ......|..:..||          ||:. |...:.|.:   :|::......|..||...:| |.:
  Rat  2364 VTVHSPHSVMPGTPVGQSVSPRPFPLMRCGPGQVPCDVLGCVEQEQLCDGREDCLDGSDEQHCAS 2428

  Fly  4938 TIPDLVEGQTYKFRVSAVNAAGTGEPSDSTPPIIA-KARNKP-----------PIIDRSSLVEVR 4990
            ..|..|                   |:.:.|.:.| :|...|           |:..|..| :|.
  Rat  2429 PEPFTV-------------------PTTALPGLPASRALCSPSQLSCGSGECLPLEHRCDL-QVN 2473

  Fly  4991 IKAG--QSFTFDCKVSGEPAPQTKWLLKKKEVYSKDNVKVTNVDYNTKLKVNSATRSDSGIYTVF 5053
            .:.|  :....||.:    ||.:.|                          :..:|| .|:..:|
  Rat  2474 CQDGSDEDDCVDCVL----APWSGW--------------------------SDCSRS-CGLGLIF 2507

  Fly  5054 AENANGEDSADVKVTVIDKPAPPNGPLKVDEINSESCTLH-------------W----------- 5094
            ....            :.:|..|.|...:|::.|:.|.:.             |           
  Rat  2508 QHRE------------LLRPPLPGGSCLLDQLRSQPCFVQACPVAGAWAKWGPWEPCSVSCGGGH 2560

  Fly  5095 --------NPPDDDGGQPIDNYVVEKLDETTGRWIPAGETD 5127
                    :||..:||.|......||:  .....:..|:||
  Rat  2561 QSRQRSCVDPPPKNGGAPCPGPSHEKV--LCNLQLCPGDTD 2599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btNP_001162825.1 I-set 9..101 CDD:254352
Ig 26..100 CDD:143165
I-set 119..210 CDD:254352
Ig 136..209 CDD:143165
I-set 228..320 CDD:254352
IGc2 242..312 CDD:197706
I-set 335..425 CDD:254352
Ig 350..423 CDD:143165
Ig 436..530 CDD:299845
I-set 438..532 CDD:254352
I-set 545..636 CDD:254352
Ig 560..633 CDD:143165
Ig 657..731 CDD:143165
I-set 746..835 CDD:254352
Ig 1496..1586 CDD:299845
IG_like 1503..1588 CDD:214653
I-set 1639..1724 CDD:254352
IG 1750..1821 CDD:214652
IGc2 1750..1806 CDD:197706
I-set 1826..1909 CDD:254352
Ig 1831..1897 CDD:299845
I-set 1914..1998 CDD:254352
Ig 2020..2095 CDD:299845
FN3 2100..2194 CDD:238020
FN3 2203..2292 CDD:238020
I-set 2311..2395 CDD:254352
Ig 2321..2395 CDD:299845
FN3 2399..2493 CDD:238020
FN3 2501..2590 CDD:238020
I-set 2602..2693 CDD:254352
Ig 2619..2693 CDD:299845
FN3 2697..2793 CDD:238020
FN3 2801..2893 CDD:238020
I-set 2902..2995 CDD:254352
Ig 2919..2993 CDD:299845
FN3 2999..3088 CDD:238020
FN3 3102..3191 CDD:238020
I-set 3208..3292 CDD:254352
Ig 3219..3292 CDD:299845
FN3 3296..3390 CDD:238020
FN3 3400..3489 CDD:238020
I-set 3494..3590 CDD:254352
Ig 3516..3590 CDD:299845
FN3 3594..3682 CDD:238020
FN3 3694..3781 CDD:238020
I-set 3795..3885 CDD:254352
Ig 3813..3885 CDD:299845
FN3 3889..3980 CDD:238020
FN3 3990..4082 CDD:238020
I-set 4090..4181 CDD:254352
Ig 4108..4181 CDD:299845
FN3 4185..4271 CDD:238020
FN3 4285..4383 CDD:238020 22/103 (21%)
Ig 4404..4480 CDD:299845 16/88 (18%)
FN3 4484..4571 CDD:238020 13/103 (13%)
FN3 4584..4677 CDD:238020 22/96 (23%)
I-set 4685..4775 CDD:254352 19/115 (17%)
Ig 4703..4775 CDD:299845 13/93 (14%)
FN3 4779..4863 CDD:238020 28/115 (24%)
FN3 4879..4970 CDD:238020 21/112 (19%)
IG 4989..5069 CDD:214652 11/81 (14%)
Ig 4996..5069 CDD:299845 9/72 (13%)
FN3 5073..5166 CDD:238020 17/87 (20%)
FN3 5175..5265 CDD:238020
I-set 5276..5366 CDD:254352
Ig 5293..5366 CDD:299845
FN3 5370..5462 CDD:238020
FN3 5470..5561 CDD:238020
Ig 5559..5654 CDD:299845
I-set 5570..5660 CDD:254352
FN3 5664..5755 CDD:238020
FN3 5764..5853 CDD:238020
I-set 5865..5954 CDD:254352
Ig 5882..5954 CDD:299845
FN3 5958..6049 CDD:238020
FN3 6062..6153 CDD:238020
I-set 6173..6255 CDD:254352
Ig_Titin_like 6182..6255 CDD:143225
FN3 6259..6350 CDD:238020
FN3 6359..6451 CDD:238020
FN3 6470..6552 CDD:238020
I-set 6564..6650 CDD:254352
Ig_Titin_like 6577..6650 CDD:143225
FN3 6654..6745 CDD:238020
FN3 6754..6840 CDD:238020
I-set 6855..6946 CDD:254352
Ig 6874..6946 CDD:299845
FN3 6950..7042 CDD:238020
FN3 7050..7139 CDD:238020
FN3 7151..7237 CDD:238020
I-set 7254..7334 CDD:254352
Ig 7272..7339 CDD:143165
IG_like 7354..7440 CDD:214653
Ig 7366..7440 CDD:299845
FN3 7444..7531 CDD:238020
FN3 7545..7637 CDD:238020
I-set 7648..7737 CDD:254352
Ig 7665..7734 CDD:143165
Ig 7760..7833 CDD:299845
FN3 7837..7927 CDD:238020
STKc_Twitchin_like 7986..8244 CDD:271016
S_TKc 7989..8244 CDD:214567
Ig 8311..8394 CDD:299845
I-set 8312..8401 CDD:254352
I-set 8437..8525 CDD:254352
Ig 8455..8519 CDD:143165
I-set 8632..8721 CDD:254352
IGc2 8646..8711 CDD:197706
I-set 8740..8831 CDD:254352
Ig 8757..8826 CDD:143165
I-set 8839..8922 CDD:254352
Ig 8845..>8909 CDD:299845
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 393..468 CDD:285899
TIL 472..527 CDD:280072
VWD 556..716 CDD:214566
C8 769..826 CDD:285899
TIL 830..883 CDD:280072
VWD 1019..1168 CDD:278521
C8 1206..1276 CDD:285899
TIL 1280..1336 CDD:280072
LDLa 1381..1416 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1457..1491 CDD:238060
LDLa 1497..1528 CDD:197566
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567
Ldl_recept_a 1568..1604 CDD:278486
TSP1 1702..1753 CDD:214559
TSP1 1758..1812 CDD:214559 12/46 (26%)
TIL 1822..1873 CDD:280072 8/50 (16%)
TSP1 1917..1970 CDD:214559 10/67 (15%)
FA58C 2070..2226 CDD:214572 36/179 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109 5/25 (20%)
FA58C <2111..2225 CDD:238014 22/128 (17%)
LDLa 2236..2270 CDD:238060 7/40 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335 17/74 (23%)
LDLa 2392..2426 CDD:238060 7/33 (21%)
LDLa 2449..2483 CDD:238060 6/34 (18%)
TSP1 2490..2538 CDD:214559 12/86 (14%)
TSP1 2543..2595 CDD:214559 8/53 (15%)
TIL 2618..2660 CDD:280072
TSP1 2703..2752 CDD:214559
TSP1 2760..2813 CDD:214559
TSP_1 2819..2867 CDD:278517
TIL 2871..2930 CDD:280072
VWC_out 2932..2979 CDD:214565
TSP1 2972..3023 CDD:214559
TIL 3075..3127 CDD:280072
TSP1 3240..3292 CDD:214559
TIL 3300..3350 CDD:280072
TSP1 3396..3439 CDD:214559
TSP1 3460..3504 CDD:214559
TIL 3514..3570 CDD:280072
TSP1 3633..3677 CDD:214559
TSP1 3810..3862 CDD:214559
TSP1 3879..3927 CDD:214559
TSP1 3945..3998 CDD:214559
TSP1 4003..4055 CDD:214559
TIL 4058..4113 CDD:280072
TSP1 4158..4208 CDD:214559
TSP1 4252..4303 CDD:214559
TSP1 4367..4418 CDD:214559
TIL 4422..4477 CDD:280072
TSP1 4611..4659 CDD:214559
TIL 4673..4719 CDD:280072
TSP1 4763..4812 CDD:214559
TIL 4814..4868 CDD:280072
TIL 4920..4978 CDD:280072
VWC 4980..5035 CDD:302663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4475
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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