DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bt and Lama5

DIOPT Version :9

Sequence 1:NP_001162825.1 Gene:bt / 43814 FlyBaseID:FBgn0005666 Length:8933 Species:Drosophila melanogaster
Sequence 2:NP_001178538.1 Gene:Lama5 / 140433 RGDID:621023 Length:3713 Species:Rattus norvegicus


Alignment Length:1782 Identity:299/1782 - (16%)
Similarity:560/1782 - (31%) Gaps:629/1782 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   606 LLDPQLEDSGLYKCNIKNTLGELNANLT-------LNIEIVPVIKDKPKIIKIIKKRTVVIECTV 663
            ||| .||.:|....:|:..|..:||:.|       ||..|..                  ::..:
  Rat  2175 LLD-DLERAGALLPSIREQLRGINASSTAWARLHRLNASIAD------------------LQSKL 2220

  Fly   664 ASKFEPKCTWYKETSTVKESKRHVYQVEQTKEGEFAVKLE------INDVEESDKGAYKLVASNE 722
            .|...|.....::..|:::....:.| :..:.|..|..::      :::.|.:...|.||:   |
  Rat  2221 RSPLGPHNQTAEQLQTLEQQSISLQQ-DTERLGSQATGVQDQAGRLLDNTESTLVRAQKLL---E 2281

  Fly   723 KGEAVSQIVNLV---------DIPE-EERKPCKPEISRKL---------ADQKVAESKTFELLVS 768
            ..:|||:.:|.:         ..|. |:.:....|:.|.|         |.|.|||::..|....
  Rat  2282 IVQAVSRALNELASQGFPGNATTPSGEQLRWALAEVERLLWDMRTRDLGAPQAVAEAELAEAQRL 2346

  Fly   769 LSQTDRKCKVEWYKGSTVIRETKDITTTFD--------------GTTARLTFSSARTEHTSNYKV 819
            :::...:....|.:...:....:|....::              .||......::|.|......:
  Rat  2347 MARVQEQLTSFWEENQALATHIRDQLAQYESGLMDLREALNHAVNTTREADELNSRNEERLREAL 2411

  Fly   820 IVTNEVGKDESSCK-------ITVEKVAKKKEEKPKEKEK---------------TKNEKEVEQK 862
            ....|:.:|.::.|       :|:..|::..:...|.||.               .|..:.....
  Rat  2412 QWKQELSQDNATLKATLQAASLTLAHVSELLQGIDKAKEDLEHLAASLDGAWTPLLKRMQAFSPA 2476

  Fly   863 EMEEDKNESGQSVAQ--TEGRINIEQISEGDPKEELTVKEEILDKRDTQEVKESSVELQDSAGHE 925
            ..:.|..|:.::.||  .:..||:..|.:|..::.. ::..:........:.::....:|:|||.
  Rat  2477 SSKVDLVEAAEAHAQKLNQLAINLSGIIQGINQDRF-IQRAVEASNAYSSILQAVQAAEDAAGHA 2540

  Fly   926 VPEPKK------------------ATSDSKLDQ--SNQKNLDKKHKTDQSESKTNKNVSLAEPIK 970
            :.:..:                  |.|.:.::.  .:|:.|...|...|:.....::|.    .|
  Rat  2541 LRQASRTWEMVVQRGLAAGARQLLANSSALVETILGHQERLGLAHGRLQAAGTQLRDVR----AK 2601

  Fly   971 SNKQESEEQQATEQIGLKKVDRKASIVSVKEEISSDVRRKSTIKAKEEITVDDKKASSRRSSLAV 1035
            .|:..::.|:|           :|.:.....|.|..:.....:.|:...|     |:..:|.|..
  Rat  2602 KNQLAAQIQEA-----------QAMLAMDTSETSEKIAHAKAVAAEARDT-----AAHVQSQLQG 2650

  Fly  1036 EESNTESRRSSI--IDKKPLEQVDNKPIDANKNPQPLKEEIPRLKPAEKRRTSKVIEEPKPDEGL 1098
            .:.|.|..:|.:  :..:.|.|.:.   ||:.:...|::.:|:|                    |
  Rat  2651 MQKNVERWQSQLGGLRGQDLSQAER---DASSSVSTLEKTLPQL--------------------L 2692

  Fly  1099 PKLR--------------KASIAQVKE---EAKPAAPKLKAKAKAKPK----------------Y 1130
            .||.              .|:|.:|::   :|:.||.|:|...|...:                |
  Rat  2693 AKLSHLENRGVHNASLALSANIGRVRKLIAQARSAANKVKVSMKFNGRSGVRLRTPRDLADLAAY 2757

  Fly  1131 EEL----------PEIPDYERPQLEKYEKSDFTPSDFARDLEIPNKMEKPIIDSGKKEPAVLAQK 1185
            ..|          ||..:....:...|..|.....|: ..:.:.|:....:...|:..|..|:..
  Rat  2758 TALKFYIQSPVPAPEPGENTGDRFVLYMGSRQATGDY-MGVSLRNQKVHWVYRLGEAGPTTLSID 2821

  Fly  1186 NGIPKKTDIIEQYA--DEPKGLKVGKGKLPDE--------GD----GRDGAV-LKP--------- 1226
            ..|.      ||:|  ...:.|:.|...:..|        ||    ||:|.: |.|         
  Rat  2822 ENIG------EQFAAVSIDRTLQFGHMSVTVEKHMVHEIKGDTVAPGREGLLNLNPDDFVFYVGG 2880

  Fly  1227 ---VIIEPE-----------------KEILDLGN----KKNNQHADKP---------------TV 1252
               ....||                 :|::.|.|    .|.....|||               :.
  Rat  2881 YPSNFTPPEPLRFPGYLGCIEMDTLNEEVVSLYNFEQAFKLTTAVDKPCARSKTTGDPWLTDGSY 2945

  Fly  1253 LD------IIKQRRRSSIRNLMTKEPIQNESFLGVV--LKP-------VIKD------------- 1289
            ||      |..:::.|:.:..  ::.::..|:.|::  ||.       .::|             
  Rat  2946 LDGSGFARITFEKQFSNTKRF--EQELRLVSYNGIIFFLKQENQFLCLAVQDGTLVLLYDFGSGL 3008

  Fly  1290 -TREQAAPQQAI-----------------------------------QLTKANA-------TEQF 1311
             ..:...|.||:                                   :|..|:|       .|:.
  Rat  3009 KRADPLQPPQALTAASKAIQVFLLAGARKRVLVRVERATVFSVDQDNELEMADAYYLGGVPPEEL 3073

  Fly  1312 SPT---------------KAVKA--QVADLKKPETLA---------------TLEDNYERPVL-- 1342
            .|:               |.:||  :..|||:..|..               |...:...|:.  
  Rat  3074 PPSLRRLFPSGGSVRGCIKGIKALGKYVDLKRLNTTGISFSCTADLLMGRTMTFHGHGFLPLALP 3138

  Fly  1343 -------EKYDPFSIDKTKSEKSTPSIITPD------IRGPEVKLPVQETKEEKQKV-------- 1386
                   |.|..|....|:.:.......:||      :||..|.|.....:.|.|:|        
  Rat  3139 DVAPITGEVYSGFGFRGTQDDNLLYYRTSPDGPYQVSLRGGHVTLQFMNREVETQRVFADGAPHY 3203

  Fly  1387 ---------------PKMQP--PAPGDPPKIEVIREKRPSLAPEPPSR--RGSLIPPADTGRRPS 1432
                           .::||  ...|..|.::        |.||.|.|  .|.| |.:.|....|
  Rat  3204 VAFYSNVTRVWLYVDDQLQPVKSREGTTPMLQ--------LQPEEPPRLLLGGL-PMSGTFHNFS 3259

  Fly  1433 LIINDEKKLRPGEVMDTRLLRPGEVGEGQRRRPSIDVR--------RPSVQDLEDLINKPSTPLR 1489
            ..|::        |...||..|..|.:..:...|::|.        :.|....:.:..:...|.:
  Rat  3260 GCISN--------VFVQRLRGPQRVFDLHQNMGSVNVSVGCTPAQLQTSGATAQKVSRRSRQPSQ 3316

  Fly  1490 DVGDGGPPSIVDVQESYSVVEDSTAYLTVGVEGSPAPTFKFYKGVSEILEGGRFKFLTDGQTNTI 1554
            |:....|..:..:|::|..             |.|.|::..:.|||            ....|.:
  Rat  3317 DLTCMTPWLLGTIQDAYQF-------------GGPGPSYLQFVGVS------------PSHRNRL 3356

  Fly  1555 TLCMRKCKPNDESKYKIVVSNIHGEDSAEMQLYVS--DSSGMDFRAMLKKRRYQKWDKDEQDPNW 1617
            .|.| ..:|             ||. |..:.|||:  .|........|...|:            
  Rat  3357 HLSM-LVRP-------------HGA-SQGLLLYVAPLSSHSPSLVLFLNHGRF------------ 3394

  Fly  1618 GDLKETEKPLPALKKVERKVESFLSPLIDQFAKEGKDKKVVFEARFSKPNCKPKWLFRKDEVFTG 1682
              :.:||.|.|.|:...|           |.::.|:..:|           ..:|..::.::...
  Rat  3395 --VAQTEGPGPQLQAQSR-----------QHSRAGQWHRV-----------SVRWGMQQVQLVVD 3435

  Fly  1683 SKFKFKQENDTYQLIITTPKVEDTGKYTIEIGGVSSTAFLNVEEADPTYTFTKPLKK------KL 1741
            ....:.|:....::    .:.|....||:.:||:.:.::.:  :...:..|:..:||      .|
  Rat  3436 GSQTWSQKAPHRRV----HRAEGPQHYTLFVGGLPAGSYSS--KLPVSVGFSGCMKKLQLDKRPL 3494

  Fly  1742 EGFTQHETTLECSVSSSMANVHWFKNNTKLESDDPRYLISKDINGNLKLIIKDSVLDDAGLYRCQ 1806
            ...|:......| ||..:.:..:|..:                .|.:.|.:..:.:....|   :
  Rat  3495 RAPTRMVGVTPC-VSGPLEDGLFFPGS----------------EGAVTLELPKAKMPHVSL---E 3539

  Fly  1807 LDKQPDKTECNL-----KVTEYPYKFVKVLKSQQCIEKDTVTLACEIDDAMGEVQ-WLRNGEEIK 1865
            |:.:| .....|     :....||..:::|..|         :....:|..||.. |:...:   
  Rat  3540 LEVRP-LAAAGLIFHLGQAHATPYVQLQLLTEQ---------VLLRANDGAGEFSTWVTYPK--- 3591

  Fly  1866 PDKRIQIVKDGRKRKL-VIKDCKVTDAGQFKCTTNADTTESEIIINYQNRFNKKLKDTEAVEREK 1929
                   :.||:..:: |||       |:.......||        :.|....:|.:|.|.....
  Rat  3592 -------LCDGQWHQVTVIK-------GRNTLRLEVDT--------HSNHTTGRLPETLADSPAL 3634

  Fly  1930 LILDIELQDQTAPCDWK-------------FNGEPIVPSESIEIKNMGGGKHQLIFSSLDMSNEG 1981
            |.|....:.:.|   |.             |||.|:..:.|..|:...|           ||.  
  Rat  3635 LHLGSPPKSEAA---WPEPPAYRGCLRKLLFNGAPVNMTASARIQGAVG-----------MSG-- 3683

  Fly  1982 EITCESGQLS-SKCKLSIRKGESRPNI 2007
               |.||.|: ||...::.:.::.|::
  Rat  3684 ---CPSGTLAISKQGKALTQRQANPSV 3707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
btNP_001162825.1 I-set 9..101 CDD:254352
Ig 26..100 CDD:143165
I-set 119..210 CDD:254352
Ig 136..209 CDD:143165
I-set 228..320 CDD:254352
IGc2 242..312 CDD:197706
I-set 335..425 CDD:254352
Ig 350..423 CDD:143165
Ig 436..530 CDD:299845
I-set 438..532 CDD:254352
I-set 545..636 CDD:254352 12/36 (33%)
Ig 560..633 CDD:143165 10/26 (38%)
Ig 657..731 CDD:143165 14/79 (18%)
I-set 746..835 CDD:254352 18/118 (15%)
Ig 1496..1586 CDD:299845 16/89 (18%)
IG_like 1503..1588 CDD:214653 16/84 (19%)
I-set 1639..1724 CDD:254352 10/84 (12%)
IG 1750..1821 CDD:214652 10/75 (13%)
IGc2 1750..1806 CDD:197706 7/55 (13%)
I-set 1826..1909 CDD:254352 14/84 (17%)
Ig 1831..1897 CDD:299845 12/67 (18%)
I-set 1914..1998 CDD:254352 22/97 (23%)
Ig 2020..2095 CDD:299845
FN3 2100..2194 CDD:238020
FN3 2203..2292 CDD:238020
I-set 2311..2395 CDD:254352
Ig 2321..2395 CDD:299845
FN3 2399..2493 CDD:238020
FN3 2501..2590 CDD:238020
I-set 2602..2693 CDD:254352
Ig 2619..2693 CDD:299845
FN3 2697..2793 CDD:238020
FN3 2801..2893 CDD:238020
I-set 2902..2995 CDD:254352
Ig 2919..2993 CDD:299845
FN3 2999..3088 CDD:238020
FN3 3102..3191 CDD:238020
I-set 3208..3292 CDD:254352
Ig 3219..3292 CDD:299845
FN3 3296..3390 CDD:238020
FN3 3400..3489 CDD:238020
I-set 3494..3590 CDD:254352
Ig 3516..3590 CDD:299845
FN3 3594..3682 CDD:238020
FN3 3694..3781 CDD:238020
I-set 3795..3885 CDD:254352
Ig 3813..3885 CDD:299845
FN3 3889..3980 CDD:238020
FN3 3990..4082 CDD:238020
I-set 4090..4181 CDD:254352
Ig 4108..4181 CDD:299845
FN3 4185..4271 CDD:238020
FN3 4285..4383 CDD:238020
Ig 4404..4480 CDD:299845
FN3 4484..4571 CDD:238020
FN3 4584..4677 CDD:238020
I-set 4685..4775 CDD:254352
Ig 4703..4775 CDD:299845
FN3 4779..4863 CDD:238020
FN3 4879..4970 CDD:238020
IG 4989..5069 CDD:214652
Ig 4996..5069 CDD:299845
FN3 5073..5166 CDD:238020
FN3 5175..5265 CDD:238020
I-set 5276..5366 CDD:254352
Ig 5293..5366 CDD:299845
FN3 5370..5462 CDD:238020
FN3 5470..5561 CDD:238020
Ig 5559..5654 CDD:299845
I-set 5570..5660 CDD:254352
FN3 5664..5755 CDD:238020
FN3 5764..5853 CDD:238020
I-set 5865..5954 CDD:254352
Ig 5882..5954 CDD:299845
FN3 5958..6049 CDD:238020
FN3 6062..6153 CDD:238020
I-set 6173..6255 CDD:254352
Ig_Titin_like 6182..6255 CDD:143225
FN3 6259..6350 CDD:238020
FN3 6359..6451 CDD:238020
FN3 6470..6552 CDD:238020
I-set 6564..6650 CDD:254352
Ig_Titin_like 6577..6650 CDD:143225
FN3 6654..6745 CDD:238020
FN3 6754..6840 CDD:238020
I-set 6855..6946 CDD:254352
Ig 6874..6946 CDD:299845
FN3 6950..7042 CDD:238020
FN3 7050..7139 CDD:238020
FN3 7151..7237 CDD:238020
I-set 7254..7334 CDD:254352
Ig 7272..7339 CDD:143165
IG_like 7354..7440 CDD:214653
Ig 7366..7440 CDD:299845
FN3 7444..7531 CDD:238020
FN3 7545..7637 CDD:238020
I-set 7648..7737 CDD:254352
Ig 7665..7734 CDD:143165
Ig 7760..7833 CDD:299845
FN3 7837..7927 CDD:238020
STKc_Twitchin_like 7986..8244 CDD:271016
S_TKc 7989..8244 CDD:214567
Ig 8311..8394 CDD:299845
I-set 8312..8401 CDD:254352
I-set 8437..8525 CDD:254352
Ig 8455..8519 CDD:143165
I-set 8632..8721 CDD:254352
IGc2 8646..8711 CDD:197706
I-set 8740..8831 CDD:254352
Ig 8757..8826 CDD:143165
I-set 8839..8922 CDD:254352
Ig 8845..>8909 CDD:299845
Lama5NP_001178538.1 Laminin_N 58..302 CDD:278484
EGF_Lam 303..351 CDD:238012
EGF_Lam 362..425 CDD:238012
EGF_Lam 432..473 CDD:238012
EGF_Lam 499..546 CDD:214543
EGF_Lam 545..588 CDD:238012
Laminin_EGF 592..639 CDD:278482
Laminin_EGF 637..684 CDD:278482
EGF_Lam 681..723 CDD:238012
EGF_Lam 780..831 CDD:238012
EGF_Lam 832..>871 CDD:238012
Laminin_EGF 1442..1490 CDD:278482
Laminin_EGF 1532..1583 CDD:278482
Laminin_EGF 1581..1629 CDD:278482
LamB 1689..1818 CDD:214597
EGF_Lam 1863..>1899 CDD:238012
Laminin_EGF 1914..1967 CDD:278482
EGF_Lam 1969..2022 CDD:238012
EGF_Lam 2024..2068 CDD:214543
EGF_Lam 2070..2116 CDD:238012
EGF_Lam 2118..2168 CDD:214543
Laminin_I 2189..2448 CDD:283627 45/280 (16%)
MscS_porin 2397..2617 CDD:289559 35/235 (15%)
Laminin_II 2639..2760 CDD:283628 27/148 (18%)
LamG 2781..2908 CDD:214598 23/133 (17%)
LamG 2943..3095 CDD:238058 18/153 (12%)
LamG 3151..3269 CDD:214598 27/134 (20%)
LamG 3338..3490 CDD:238058 37/220 (17%)
LamG 3514..3663 CDD:238058 31/205 (15%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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