DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bt and sigirr

DIOPT Version :9

Sequence 1:NP_001162825.1 Gene:bt / 43814 FlyBaseID:FBgn0005666 Length:8933 Species:Drosophila melanogaster
Sequence 2:XP_002937693.3 Gene:sigirr / 100486638 XenbaseID:XB-GENE-492815 Length:397 Species:Xenopus tropicalis


Alignment Length:450 Identity:92/450 - (20%)
Similarity:157/450 - (34%) Gaps:167/450 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly  1736 PLKKKLEGFTQHETTLECSV---SSSMANVHWFKNNTKLES------------DDPRYLISKDIN 1785
            ||.:.|........:|.||:   ......:.|.|:.|.::.            :..::.:|..:.
 Frog    17 PLDQDLWPEKGSSLSLNCSLWVSGGCNGTLRWLKDGTAVQDLYREQHSAWEGFNSSKWFLSSILY 81

  Fly  1786 GNLKLIIKDSVLDDAGLYRCQLDKQPDKTECNLKVTEYPYKFVK------------VLKSQQCIE 1838
            .|:      |..:|.|.:.|:::        |...:...:|..|            ||.:  .|.
 Frog    82 VNV------SSAEDYGKFTCEVE--------NATASFTLHKGEKAGHVAAVIFALAVLTA--LIV 130

  Fly  1839 KDTVTLACEIDDAMGEVQWLRN--GEEIKPDKRIQIVKDGRKRKLVIKDCKVTDAGQFKCTTNAD 1901
            ...:.|.|.::..:    |.||  |:   |:     :.|||          ::||....|.:|.|
 Frog   131 GSVIYLKCRLNARL----WYRNKYGD---PE-----INDGR----------LSDAYVSYCPSNTD 173

  Fly  1902 TTESEIII--NYQNRFNKKLKDTEAVEREKLILDIELQDQTAPCDWKFNGEPIVPSESIE-IKNM 1963
            |..:..|:  :.:||:..||.          :.::.|...|.|              |.| :.|:
 Frog   174 TKFTNFILKPHLENRYGYKLH----------LDEMSLMPNTEP--------------SAELLMNV 214

  Fly  1964 GGGKHQLIFSSLDMSNEGEITCESGQLSSK-CKLSIRKGESRPNIDCPDKFSGPISAPVLLEVPF 2027
            ...:..::..||            |.|... |:.|.|:|..|                 |||:..
 Frog   215 SRCRRLIVVLSL------------GYLQQDWCQNSFREGLFR-----------------LLELSH 250

  Fly  2028 KVSGTKQTPVEAKLFKDGKPLPVKDVEVAVTD------DKVTFKIKK-----PSRD------LSG 2075
            |       |:.. ||::.:    |:|.|.||.      .|:...:.|     ||.|      |:.
 Frog   251 K-------PIFI-LFENQQ----KEVPVGVTQLLHSQRGKLKVLLWKSGSVAPSSDFWKEICLAL 303

  Fly  2076 PYQIKISNGQGEDTKDVQIICQDVPQPPQDVDITDVYQTSCVVSFNP-PSDDGGTPITKY 2134
            |.::.::.|:|    |.|.|.||    .:|..:|...:|:     :| |..|.|...|.|
 Frog   304 PRKVSLTEGRG----DPQTINQD----DKDPMLTPTSETA-----DPDPEGDLGVRRTFY 350

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
btNP_001162825.1 I-set 9..101 CDD:254352
Ig 26..100 CDD:143165
I-set 119..210 CDD:254352
Ig 136..209 CDD:143165
I-set 228..320 CDD:254352
IGc2 242..312 CDD:197706
I-set 335..425 CDD:254352
Ig 350..423 CDD:143165
Ig 436..530 CDD:299845
I-set 438..532 CDD:254352
I-set 545..636 CDD:254352
Ig 560..633 CDD:143165
Ig 657..731 CDD:143165
I-set 746..835 CDD:254352
Ig 1496..1586 CDD:299845
IG_like 1503..1588 CDD:214653
I-set 1639..1724 CDD:254352
IG 1750..1821 CDD:214652 13/85 (15%)
IGc2 1750..1806 CDD:197706 11/70 (16%)
I-set 1826..1909 CDD:254352 21/96 (22%)
Ig 1831..1897 CDD:299845 14/67 (21%)
I-set 1914..1998 CDD:254352 14/85 (16%)
Ig 2020..2095 CDD:299845 23/91 (25%)
FN3 2100..2194 CDD:238020 8/35 (23%)
FN3 2203..2292 CDD:238020
I-set 2311..2395 CDD:254352
Ig 2321..2395 CDD:299845
FN3 2399..2493 CDD:238020
FN3 2501..2590 CDD:238020
I-set 2602..2693 CDD:254352
Ig 2619..2693 CDD:299845
FN3 2697..2793 CDD:238020
FN3 2801..2893 CDD:238020
I-set 2902..2995 CDD:254352
Ig 2919..2993 CDD:299845
FN3 2999..3088 CDD:238020
FN3 3102..3191 CDD:238020
I-set 3208..3292 CDD:254352
Ig 3219..3292 CDD:299845
FN3 3296..3390 CDD:238020
FN3 3400..3489 CDD:238020
I-set 3494..3590 CDD:254352
Ig 3516..3590 CDD:299845
FN3 3594..3682 CDD:238020
FN3 3694..3781 CDD:238020
I-set 3795..3885 CDD:254352
Ig 3813..3885 CDD:299845
FN3 3889..3980 CDD:238020
FN3 3990..4082 CDD:238020
I-set 4090..4181 CDD:254352
Ig 4108..4181 CDD:299845
FN3 4185..4271 CDD:238020
FN3 4285..4383 CDD:238020
Ig 4404..4480 CDD:299845
FN3 4484..4571 CDD:238020
FN3 4584..4677 CDD:238020
I-set 4685..4775 CDD:254352
Ig 4703..4775 CDD:299845
FN3 4779..4863 CDD:238020
FN3 4879..4970 CDD:238020
IG 4989..5069 CDD:214652
Ig 4996..5069 CDD:299845
FN3 5073..5166 CDD:238020
FN3 5175..5265 CDD:238020
I-set 5276..5366 CDD:254352
Ig 5293..5366 CDD:299845
FN3 5370..5462 CDD:238020
FN3 5470..5561 CDD:238020
Ig 5559..5654 CDD:299845
I-set 5570..5660 CDD:254352
FN3 5664..5755 CDD:238020
FN3 5764..5853 CDD:238020
I-set 5865..5954 CDD:254352
Ig 5882..5954 CDD:299845
FN3 5958..6049 CDD:238020
FN3 6062..6153 CDD:238020
I-set 6173..6255 CDD:254352
Ig_Titin_like 6182..6255 CDD:143225
FN3 6259..6350 CDD:238020
FN3 6359..6451 CDD:238020
FN3 6470..6552 CDD:238020
I-set 6564..6650 CDD:254352
Ig_Titin_like 6577..6650 CDD:143225
FN3 6654..6745 CDD:238020
FN3 6754..6840 CDD:238020
I-set 6855..6946 CDD:254352
Ig 6874..6946 CDD:299845
FN3 6950..7042 CDD:238020
FN3 7050..7139 CDD:238020
FN3 7151..7237 CDD:238020
I-set 7254..7334 CDD:254352
Ig 7272..7339 CDD:143165
IG_like 7354..7440 CDD:214653
Ig 7366..7440 CDD:299845
FN3 7444..7531 CDD:238020
FN3 7545..7637 CDD:238020
I-set 7648..7737 CDD:254352
Ig 7665..7734 CDD:143165
Ig 7760..7833 CDD:299845
FN3 7837..7927 CDD:238020
STKc_Twitchin_like 7986..8244 CDD:271016
S_TKc 7989..8244 CDD:214567
Ig 8311..8394 CDD:299845
I-set 8312..8401 CDD:254352
I-set 8437..8525 CDD:254352
Ig 8455..8519 CDD:143165
I-set 8632..8721 CDD:254352
IGc2 8646..8711 CDD:197706
I-set 8740..8831 CDD:254352
Ig 8757..8826 CDD:143165
I-set 8839..8922 CDD:254352
Ig 8845..>8909 CDD:299845
sigirrXP_002937693.3 Ig strand A 14..19 CDD:409353 1/1 (100%)
Ig_3 27..99 CDD:404760 12/85 (14%)
Ig strand B 30..39 CDD:409353 3/8 (38%)
Ig strand C 43..49 CDD:409353 0/5 (0%)