DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and Pax8

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_112403.2 Gene:Pax8 / 81819 RGDID:620434 Length:457 Species:Rattus norvegicus


Alignment Length:430 Identity:157/430 - (36%)
Similarity:199/430 - (46%) Gaps:99/430 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPR 162
            |.|:|||||.||.|||||:..||:||:|||.|.|||||||.|:||:||||||||||||||||||.
  Rat    10 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPG 74

  Fly   163 AIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQK 227
            .||||||:|||.:||.||..|||:.|::||||||||||.|.||.||.:||||||||::|....|.
  Rat    75 VIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQP 139

  Fly   228 EQQSTGS--GSSSTSAGNSISAKVSV---------------SIGGNVSNVASGS---RGTLSSST 272
            ......|  .:.|.|.|:::....:|               ||.|.:.....||   |....|..
  Rat   140 FNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDNKRKMDDSDQ 204

  Fly   273 DLMQTATPLNSSESGG------------------------------ASNSGEGSEQEAIYEKLRL 307
            |..:.:....||.||.                              ||.|....|| .:| .|.|
  Rat   205 DSCRLSIDSQSSSSGPRKHLRTDTFGQHHLEPLECPFERQHYPEAYASPSHTKGEQ-GLY-PLPL 267

  Fly   308 LNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQ--ALQQHQQQSWPPRHYSGSWY 370
            ||:....|...|.|:. .||    ..:|.|..::| :|...|.  |::|.     .|...|.|..
  Rat   268 LNSTLDDGKATLTPSN-TPL----GRNLSTHQTYP-VVADPHSPYAIKQE-----TPELSSSSST 321

  Fly   371 PTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASI-----------GHQRNCPVATE 424
            |:|||.........:.|     .||:.| |:.|.|.....||:           |.:...|.   
  Rat   322 PSSLSSSAFLDLQQVGS-----GGPAGA-SVPPFNAFSHAASVYGQFTGQALLSGREMVGPT--- 377

  Fly   425 DIHLKKELDGHQSDETGSGEGENSN-------GGASNIGN 457
                   |.|:......||:|..::       .|:...||
  Rat   378 -------LPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGN 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 90/122 (74%)
Homeobox 475..527 CDD:278475
Pax8NP_112403.2 PAX 9..133 CDD:128645 90/122 (74%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68 42/55 (76%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 32/47 (68%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..226 13/66 (20%)
Pax2_C 344..455 CDD:289189 16/78 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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