DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and ldb3a

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_021336348.1 Gene:ldb3a / 794339 ZFINID:ZDB-GENE-040121-6 Length:746 Species:Danio rerio


Alignment Length:442 Identity:97/442 - (21%)
Similarity:144/442 - (32%) Gaps:128/442 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   524 AKWRREEKLRNQRRTPNSTGASATSSSTSATASLTDS-------PNSLSACSSLLSGSAGGPSVS 581
            |.|.|.             .|...|.|....|.:|.:       ..:|..........|.||..:
Zfish   214 ADWARR-------------AAQLQSKSFRVLAHITGTEYMQDPDEEALRKSRERFESEAKGPRFA 265

  Fly   582 TI----NGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCP 642
            .:    ||||:..     :|.|.|...|      .|:|:|..|  |..::...|.....||.|..
Zfish   266 KLKNWHNGLSAQI-----LNVPQLPFLI------LPLPNIVSS--SAAEHAPVSTSIAPVCPPTM 317

  Fly   643 LGVGGHQNTHHIQSNGHAQGHA-LVP--AISPRLNFNSGSFGAMYSNMHHTALSMSDSYGAVTPI 704
            ..:.....:..:.:|...:... |:|  ...|..:..: |.|  |::.:.|  |:|.||....|:
Zfish   318 AALPNQLLSEPLIANQAPEPEVELIPEQTTVPSYSLQT-SMG--YTSQYKT--SISSSYSQPPPM 377

  Fly   705 PSFNHSAVGPLAPPSPIPQQGDL--TPSSLY---PCHMTLRPPPM---------APAHHHIVPGD 755
            ..      .||....|:.||..|  .|..::   |.|   :||||         .|..|..:...
Zfish   378 QQ------PPLMQQPPLMQQPPLMQQPPPMHQHPPMH---QPPPMQQPPLMQQPPPMQHSSIQIP 433

  Fly   756 GGRPAGVGLGSGQSANLGASCSGSGYEVLSAYA-------LPPPPM-----ASSS-----AADSS 803
            .|.|....:.:       |:...:.|....|.|       .||||.     ||||     ..|.:
Zfish   434 VGPPPPKVVST-------ATIMPASYPAGPAPAPPMVHKPAPPPPAPPAAPASSSNRPPWVTDDN 491

  Fly   804 FSAASSASANVTPHHTIAQE-------------SCPSPCSSASHFGVAHSSGFSSDPISPAVSSY 855
            |:.....| ..||:..|..:             |.|.|.:.:..|..| ...|:..|..|.....
Zfish   492 FAQKFDPS-KPTPNTNIKVQPLPQAAPPPPSIISNPVPAAPSPAFNPA-PPPFNPAPFPPVARGV 554

  Fly   856 AHMSYNYASSANTMTPSSAS-------------GTSAHVAPGKQQFFASCFY 894
            |..:..:|  |:..||..|:             |.|.|    .::|  :|.|
Zfish   555 AQRAERFA--ASNRTPLCATCNNIIRGPFLVALGRSWH----PEEF--NCHY 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 1/2 (50%)
ldb3aXP_021336348.1 PDZ_signaling 13..82 CDD:238492
DUF4749 149..239 CDD:318205 8/37 (22%)
LIM1_ZASP_Cypher 570..621 CDD:188838 7/35 (20%)
LIM2_Enigma_like 629..680 CDD:188748
LIM3_ZASP_Cypher 688..742 CDD:188844
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.030

Return to query results.
Submit another query.