DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and pax8

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_012814730.1 Gene:pax8 / 780226 XenbaseID:XB-GENE-483693 Length:467 Species:Xenopus tropicalis


Alignment Length:725 Identity:193/725 - (26%)
Similarity:250/725 - (34%) Gaps:312/725 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG-RYYETGSIRP 161
            |.|:|||||.||.|||||:..||:||:|||.|.|||||||.|:||:|||||||| ||||||||||
 Frog    27 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRP 91

  Fly   162 RAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQ 226
            ..||||||:|||.:||.||..|||:.|::||||||||||.|.||.||.:||||||||::|....|
 Frog    92 GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 156

  Fly   227 KEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNS--SESGGA 289
            .......|...|.|.|.::....:|                           ||..|  |:|.|:
 Frog   157 LFNLPMESCVKSLSPGQTLIPSSAV---------------------------TPPESPHSDSLGS 194

  Fly   290 SNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVG-QSPNHLGTRSSHPQLVHGNHQALQ 353
            :.|..|                               |:| ..|...|.|.            |.
 Frog   195 TYSISG-------------------------------LLGITQPGADGKRK------------LD 216

  Fly   354 QHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRN 418
            ...|:|            ..||                               |:|..|:|..|.
 Frog   217 DSDQES------------CRLS-------------------------------IDSQGSMGISRK 238

  Fly   419 CPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQI 483
                    .|:.|..||.                                             .:
 Frog   239 --------QLRTEAYGHH---------------------------------------------PL 250

  Fly   484 DSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATS 548
            |:||..|:|.|:|:.:                                            :|:|.
 Frog   251 DALECHFQRQHFPESY--------------------------------------------SSSTH 271

  Fly   549 SSTSATA--------SLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTL--GA 603
            |.|....        ::.|..:||::.::.:     |.::||..|.|:.|.||    |.|:  .|
 Frog   272 SKTEQALYTLPLLNNAMDDGKSSLTSTNTTI-----GRNLSTHQGYSALSELS----AFTIKQEA 327

  Fly   604 GIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPA 668
            ...||.|.||                     ..:|||..|.                        
 Frog   328 SDSSSASSTP---------------------SSLCSPTFLD------------------------ 347

  Fly   669 ISPRLNFNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAP--PSPIPQ-QGDLTPS 730
            :.|   .:||.....:|...|.|    ..||..|...:.....||...|  |..||. ||:...|
 Frog   348 LQP---ISSGCSAPSFSAFSHPA----SVYGQFTSHMASGRDVVGSTLPGYPPHIPSGQGNYASS 405

  Fly   731 SLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLG-------ASCSGSGYEVLSAYA 788
            ::         ..|..|        ||..:|.....|..|..|       :|..||.|...||..
 Frog   406 AI---------AGMVAA--------GGDYSGNAYSHGAYAAYGESWRFPSSSLLGSPYYYSSATR 453

  Fly   789 LPPPPMASSS 798
            ..|||..:.:
 Frog   454 TAPPPTTAGA 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 90/123 (73%)
Homeobox 475..527 CDD:278475 7/51 (14%)
pax8XP_012814730.1 PAX 26..151 CDD:128645 90/123 (73%)
Pax2_C 355..465 CDD:372091 32/130 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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