DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax8

DIOPT Version :10

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_012814730.1 Gene:pax8 / 780226 XenbaseID:XB-GENE-483693 Length:467 Species:Xenopus tropicalis


Alignment Length:725 Identity:193/725 - (26%)
Similarity:250/725 - (34%) Gaps:312/725 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILG-RYYETGSIRP 161
            |.|:|||||.||.|||||:..||:||:|||.|.|||||||.|:||:|||||||| ||||||||||
 Frog    27 HGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRP 91

  Fly   162 RAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQ 226
            ..||||||:|||.:||.||..|||:.|::||||||||||.|.||.||.:||||||||::|....|
 Frog    92 GVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 156

  Fly   227 KEQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNS--SESGGA 289
            .......|...|.|.|.::....:|                           ||..|  |:|.|:
 Frog   157 LFNLPMESCVKSLSPGQTLIPSSAV---------------------------TPPESPHSDSLGS 194

  Fly   290 SNSGEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVG-QSPNHLGTRSSHPQLVHGNHQALQ 353
            :.|..|                               |:| ..|...|.|.            |.
 Frog   195 TYSISG-------------------------------LLGITQPGADGKRK------------LD 216

  Fly   354 QHQQQSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRN 418
            ...|:|            ..||                               |:|..|:|..|.
 Frog   217 DSDQES------------CRLS-------------------------------IDSQGSMGISRK 238

  Fly   419 CPVATEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQI 483
                    .|:.|..||.                                             .:
 Frog   239 --------QLRTEAYGHH---------------------------------------------PL 250

  Fly   484 DSLEKEFERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATS 548
            |:||..|:|.|:|:.:                                            :|:|.
 Frog   251 DALECHFQRQHFPESY--------------------------------------------SSSTH 271

  Fly   549 SSTSATA--------SLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTL--GA 603
            |.|....        ::.|..:||::.::.:     |.::||..|.|:.|.||    |.|:  .|
 Frog   272 SKTEQALYTLPLLNNAMDDGKSSLTSTNTTI-----GRNLSTHQGYSALSELS----AFTIKQEA 327

  Fly   604 GIDSSESPTPIPHIRPSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPA 668
            ...||.|.||                     ..:|||..|.                        
 Frog   328 SDSSSASSTP---------------------SSLCSPTFLD------------------------ 347

  Fly   669 ISPRLNFNSGSFGAMYSNMHHTALSMSDSYGAVTPIPSFNHSAVGPLAP--PSPIPQ-QGDLTPS 730
            :.|   .:||.....:|...|.|    ..||..|...:.....||...|  |..||. ||:...|
 Frog   348 LQP---ISSGCSAPSFSAFSHPA----SVYGQFTSHMASGRDVVGSTLPGYPPHIPSGQGNYASS 405

  Fly   731 SLYPCHMTLRPPPMAPAHHHIVPGDGGRPAGVGLGSGQSANLG-------ASCSGSGYEVLSAYA 788
            ::         ..|..|        ||..:|.....|..|..|       :|..||.|...||..
 Frog   406 AI---------AGMVAA--------GGDYSGNAYSHGAYAAYGESWRFPSSSLLGSPYYYSSATR 453

  Fly   789 LPPPPMASSS 798
            ..|||..:.:
 Frog   454 TAPPPTTAGA 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 90/123 (73%)
Homeodomain 473..528 CDD:459649 7/54 (13%)
pax8XP_012814730.1 PAX 26..151 CDD:128645 90/123 (73%)
Pax2_C 355..465 CDD:463563 32/130 (25%)

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