DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and pax2

DIOPT Version :10

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001037888.1 Gene:pax2 / 733478 XenbaseID:XB-GENE-486801 Length:140 Species:Xenopus tropicalis


Alignment Length:120 Identity:91/120 - (75%)
Similarity:104/120 - (86%) Gaps:0/120 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPR 162
            |.||||||||||.||||||..||:||||||.|.|||||||.|:||:||||||||||||||||:|.
 Frog    17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 81

  Fly   163 AIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSIN 217
            .||||||:|||.:||.||::|||:.|::||||||||||.|.:|.||.:|||||||
 Frog    82 VIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSIN 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 91/120 (76%)
Homeodomain 473..528 CDD:459649
pax2NP_001037888.1 PAX 16..137 CDD:128645 91/120 (76%)
Blue background indicates that the domain is not in the aligned region.

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