DRSC/TRiP Functional Genomics Resources

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Protein Alignment ey and shox

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_005167911.1 Gene:shox / 664748 ZFINID:ZDB-GENE-051030-21 Length:304 Species:Danio rerio


Alignment Length:333 Identity:91/333 - (27%)
Similarity:126/333 - (37%) Gaps:103/333 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 SSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRN--CPVATEDIHLKK---ELDGHQSDE 439
            ||..:|.......||.:.|..|.  |...:|..|....|  |||     ||.|   ||:..:..|
Zfish    19 SSKESITYREVLESGLARARELG--NSETNLQEITETNNNHCPV-----HLYKEHVELEKEKLKE 76

  Fly   440 ---TGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFAR 501
               |.:.:|............:||:.|:..||::  |:||:||.:|::.||:.|:.|||||.|.|
Zfish    77 FSVTRASDGIYDCKDKKEDVKSEDEDAQSKLKQR--RSRTNFTLEQLNELERLFDETHYPDAFMR 139

  Fly   502 ERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSATASLTDSPNSLSA 566
            |.|:.::||.|||:||||.|||||.|::|   ||.......|          |||      .|.|
Zfish   140 EELSQRLGLSEARVQVWFQNRRAKCRKQE---NQMHKGVILG----------TAS------HLDA 185

  Fly   567 CSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIRPSCTSDNDNGRQS 631
            |..                            ||.:..|    ....|...::.....:       
Zfish   186 CRV----------------------------APYVNMG----ALRMPFQQVQAQLQLE------- 211

  Fly   632 EDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALVPAISPRLNFNSGSFGAMYSNMHHTALSMSD 696
                        |||.|.:.|   .:.|...||      |.|.|....||...:       |::|
Zfish   212 ------------GVGTHSHPH---LHPHLAAHA------PYLMFPPPPFGLPIA-------SLAD 248

  Fly   697 SYGAVTPI 704
            |..|...:
Zfish   249 SASAAAAV 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645
Homeobox 475..527 CDD:278475 31/51 (61%)
shoxXP_005167911.1 Homeobox 112..165 CDD:278475 31/52 (60%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000011
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6207
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.940

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