DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and hoxc12b

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_571620.1 Gene:hoxc12b / 58062 ZFINID:ZDB-GENE-000329-17 Length:283 Species:Danio rerio


Alignment Length:345 Identity:63/345 - (18%)
Similarity:112/345 - (32%) Gaps:136/345 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 QENVCT-------------NDNIPSVSSINRVLR---NLAAQKEQQSTGSGSSSTSAGNSISAKV 249
            ::|||:             ..:|....::|....   ::..|::.:...|.|:..::|.      
Zfish    47 RDNVCSLPWNPSEACSGYPQSHISGPVTLNHTYNQSCDITRQEDNKCFYSDSACATSGG------ 105

  Fly   250 SVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSES-GGASNSGEGSEQEAIYEKLRLLNTQHA 313
                |.|.|.......|.|.:|:   .:.|..|...: .|..|.|..|:.:.             
Zfish   106 ----GDNNSTNLISKEGALDNSS---VSITAENGQNNLNGMDNGGSYSKYDC------------- 150

  Fly   314 AGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIP 378
                 |.||. .|:    ||        |:|..                          ||..:.
Zfish   151 -----LTPAE-QPI----PN--------PRLCR--------------------------SLESVS 171

  Fly   379 ISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATEDIHLKKELDGHQSDETGSG 443
            ..|..|..:.|  :||  :.|||:.|:...|:|::                              
Zfish   172 GCSFINEGAKT--SSG--ITHSLTSPDIQTSVAAL------------------------------ 202

  Fly   444 EGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEFERTHYPDVFARERLAGKI 508
                 ||||          ....:.|:.::.|..::..|::.||.||....:.....|..|:.::
Zfish   203 -----NGGA----------LWYPMHRQTRKKRKPYSKLQLNELEGEFILNEFITRQRRRELSDRL 252

  Fly   509 GLPEARIQVWFSNRRAKWRR 528
            .|.:.::::||.|||.|.:|
Zfish   253 NLTDQQVKIWFQNRRMKKKR 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 5/32 (16%)
Homeobox 475..527 CDD:278475 15/51 (29%)
hoxc12bNP_571620.1 Homeobox 218..271 CDD:278475 15/52 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.