DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and pax4

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:NP_001232009.2 Gene:pax4 / 561564 ZFINID:ZDB-GENE-041210-244 Length:360 Species:Danio rerio


Alignment Length:602 Identity:160/602 - (26%)
Similarity:215/602 - (35%) Gaps:268/602 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 VNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPRAIG 165
            ||||||||:.|||||...|:.::|||..|.|||:|||||:||||||||||||:..||:|.|:|:|
Zfish    19 VNQLGGVFLNGRPLPVYKRRLMIELATEGMRPCEISRILKVSNGCVSKILGRFQRTGAIGPKAVG 83

  Fly   166 GSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQKEQQ 230
            ||:||:.|.||:|.|.|:||:.|::||||||.:|..|..|..|.:||||||||:|:.        
Zfish    84 GSRPRLLTPEVISIIVQHKRQNPTLFAWEIRQKLATERACRGDQVPSVSSINRILKK-------- 140

  Fly   231 STGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNSGEG 295
                                                 :....|:   |.|               
Zfish   141 -------------------------------------IHQDVDI---AYP--------------- 150

  Fly   296 SEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQQSW 360
                         |.:|                                .|..|..:|.|.||..
Zfish   151 -------------NEKH--------------------------------YHTEHLNVQSHFQQQM 170

  Fly   361 PPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVATED 425
                                                                             
Zfish   171 ----------------------------------------------------------------- 170

  Fly   426 IHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLEKEF 490
                                 |:|                 |:|...|:||:||.||...|||||
Zfish   171 ---------------------NTN-----------------LRRTAHRSRTAFTADQSGRLEKEF 197

  Fly   491 ERTHYPDVFARERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRRTPNSTGASATSSSTSATA 555
            ....|||:..||:||.:..|.:..|:||||||||:.|||.|..:     |..|       .:...
Zfish   198 TCGLYPDLLTREKLAEETNLSQDTIKVWFSNRRARMRRERKFEH-----NDCG-------IARRG 250

  Fly   556 SLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIPHIR-- 618
            .|.:..|:|.:.|     |..|.|:.......:||       |..|.|..|  .:..|:.|:.  
Zfish   251 FLGNCRNALISLS-----STAGCSLDDYRAHHAPS-------AFPLAAQRD--RNTFPLAHLNSN 301

  Fly   619 --PSCTSDNDNGRQSEDCRRVCSPCPLGVGGHQNTHHIQSNGHAQGHALV-PAISPRLNFNSGSF 680
              .||:.|     |:|....:|             ||   ...|..:.|| |.|..|:...:|: 
Zfish   302 ALSSCSFD-----QTESLMPMC-------------HH---GNEALAYRLVSPNIDERILLANGT- 344

  Fly   681 GAMYSNMHHTALSMSDS 697
                ..|:|..|:..:|
Zfish   345 ----QWMNHKTLTGQNS 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 75/119 (63%)
Homeobox 475..527 CDD:278475 28/51 (55%)
pax4NP_001232009.2 PAX 15..139 CDD:128645 75/119 (63%)
HOX 180..228 CDD:197696 24/47 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596789
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1152885at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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