DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ey and Pax5

DIOPT Version :9

Sequence 1:NP_001014693.1 Gene:ey / 43812 FlyBaseID:FBgn0005558 Length:898 Species:Drosophila melanogaster
Sequence 2:XP_038966491.1 Gene:Pax5 / 500453 RGDID:1565236 Length:410 Species:Rattus norvegicus


Alignment Length:560 Identity:169/560 - (30%)
Similarity:220/560 - (39%) Gaps:226/560 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 HSGVNQLGGVFVGGRPLPDSTRQKIVELAHSGARPCDISRILQVSNGCVSKILGRYYETGSIRPR 162
            |.||||||||||.||||||..||:||||||.|.|||||||.|:||:||||||||||||||||:|.
  Rat    17 HGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPG 81

  Fly   163 AIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPSVSSINRVLRNLAAQK 227
            .||||||:|||.:||.||::|||:.|::||||||||||.|.||.||.:||||||||::|....|.
  Rat    82 VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQP 146

  Fly   228 EQQSTGSGSSSTSAGNSISAKVSVSIGGNVSNVASGSRGTLSSSTDLMQTATPLNSSESGGASNS 292
            ..|...:.|.|..:..|::         .||:|::.|.|:..|.:.::...:|        ::::
  Rat   147 PNQPVPASSHSIVSTGSVT---------QVSSVSTDSAGSSYSISGILGITSP--------SADT 194

  Fly   293 GEGSEQEAIYEKLRLLNTQHAAGPGPLEPARAAPLVGQSPNHLGTRSSHPQLVHGNHQALQQHQQ 357
            .:....|.|.|                                                      
  Rat   195 NKRKRDEGIQE------------------------------------------------------ 205

  Fly   358 QSWPPRHYSGSWYPTSLSEIPISSAPNIASVTAYASGPSLAHSLSPPNDIESLASIGHQRNCPVA 422
                                  |..||             .||| |..|.               
  Rat   206 ----------------------SPVPN-------------GHSL-PGRDF--------------- 219

  Fly   423 TEDIHLKKELDGHQSDETGSGEGENSNGGASNIGNTEDDQARLILKRKLQRNRTSFTNDQIDSLE 487
                 |:|::.|                                         ..||..|::.|:
  Rat   220 -----LRKQMRG-----------------------------------------DLFTQQQLEVLD 238

  Fly   488 KEFERTHYPDVFA---------------RERLAGKIGLPEARIQVWFSNRRAKWRREEKLRNQRR 537
            :.|||.||.|:|.               |:.||    .|:|   |.|                :.
  Rat   239 RVFERQHYSDIFTTTEPIKPEQWCPVLMRQYLA----QPQA---VLF----------------QT 280

  Fly   538 TPNSTGASATSSSTSATASLTDSPNSLSACSSLLSGSAGGPSVSTINGLSSPSTL---------- 592
            |..|..||...|.....|:|| ||......||:    .|..|...:.|....||.          
  Rat   281 TEYSAMASLAGSLDDMKANLT-SPTPADIGSSV----PGPQSYPIVTGRDLASTTLPGYPPHVPP 340

  Fly   593 --STNVNAPTLGAGIDSSE-SPTPIPHIRPSCTSDNDNGR 629
              ..:.:||||...:..|| |.:|..|  |..:|.||:.|
  Rat   341 AGQGSYSAPTLTGMVPGSEFSGSPYSH--PQYSSYNDSWR 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eyNP_001014693.1 PAX 98..221 CDD:128645 93/122 (76%)
Homeobox 475..527 CDD:278475 18/66 (27%)
Pax5XP_038966491.1 PAX 16..140 CDD:128645 93/122 (76%)
Pax2_C 298..408 CDD:403565 26/88 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45636
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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